Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033070.1 Length=11145 Score E Sequences producing significant alignments: (Bits) Value seq40 109 4e-20 >seq40 Length=949583 Score = 109 bits (120), Expect = 4e-20 Identities = 213/311 (68%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 6252 AGGAAGGTTCTTTGCACTTATGTCTTGGGAAATCAGAGATTATTTTGTGATGACAGAGTA 6311 |||||| |||||| | || ||| |||| | | ||||| |||||||| || || ||||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6312 TCTTATCAAAACACACTTTGTACCTCTGTTCAAAGGTCTGACAATGGCAGACGATTTGAC 6371 | | || ||| ||| | ||| || || |||||||| | ||||||||||| ||||| || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6372 AACTGTAATCGGAAAAATT-TTAGAGAATACAGAGGGACAAGGAGAAACAGGGTATGAGA 6430 |||| | | | | ||||| | || | | || || ||||| | | || | || Sbjct 1778 AACTTTGA-CAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGA 1836 Query 6431 ATATCACGGTTTCAAACCATATAGATTACGAGAAATGGAACAACCACCAAAGGAAAGAGG 6490 ||| | | | || |||||||||| || |||||||| ||| ||||| ||||| Sbjct 1837 TCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGG 1896 Query 6491 CCAATAATCCTGTGTTTGATGTAATGGGGAAATTCCTTGGCTACCCCAACCTTATCTCAC 6550 || ||||| | ||| | || ||||| ||||| | || | || ||| | ||| | Sbjct 1897 -GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAA 1955 Query 6551 GTACCCATGAA 6561 | || |||||| Sbjct 1956 GAACGCATGAA 1966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35547817386732