Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq40 113 4e-21 >seq40 Length=949583 Score = 113 bits (124), Expect = 4e-21 Identities = 211/308 (69%), Gaps = 3/308 (1%) Strand=Plus/Plus Query 8192 TTTTCTCATTGATGTCCTGGAGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAA 8251 ||||||| | ||| ||| | || |||| |||||||| | || ||||||||||| | Sbjct 1668 TTTTCTC--TAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAATTA 1725 Query 8252 AGAAACACTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGA 8311 | |||| | |||||| || ||| | || | |||||||| |||||| | || || ||| Sbjct 1726 AATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACAACTTTGA 1785 Query 8312 TGAGGAAGATGATGGAGAATGCAAATGGACAGGGTCTGGATGATTATAGCTATATTTCTA 8371 | ||| || |||| | | || || || ||||||| ||| || | || |||| Sbjct 1786 CAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATCATCTCTA 1845 Query 8372 TTGCTAATCACATTGATTATGAGAAGTGGAATAATCACCAACGGTTGGAATCAACCGGAC 8431 | |||||| | || |||||||| || |||||| || ||| | || || || | Sbjct 1846 TAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGGAA-CGATC 1904 Query 8432 CTGTGTTTCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATG 8491 || | ||| || ||||| |||| ||||| | ||||| || ||| || || |||| Sbjct 1905 CTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAACGCATG 1964 Query 8492 AGTTCTTT 8499 | |||||| Sbjct 1965 AATTCTTT 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41995606910284