Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033703.1 Length=9314 Score E Sequences producing significant alignments: (Bits) Value seq40 93.3 3e-15 >seq40 Length=949583 Score = 93.3 bits (102), Expect = 3e-15 Identities = 212/315 (67%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 4283 GGACGATATTTCTCACTCATGAGTTGGAATCTAAGACTGTATTTTGTCATCACAGAGTAT 4342 ||| ||| || || || ||||||||| |||||| ||||||||| || || |||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 4343 TTAATCAAGAAATATTATGTACCACTTTTTTCCGGGTTGACTATGGCTGACAGTTTTAAT 4402 ||||| || || ||||||| || ||||| ||| | || ||||| || | ||||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGA-TGATTTAAC 1777 Query 4403 ATGGTT-ATGAGAAAACTGATCGATCGTACATCTGGGCAAGGAGAGAAAGGATATGAAAG 4461 | || | | ||| || | ||| | |||| || ||||| | | || | | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 4462 AATCACTTTTGCAAATCACTTCGATTATTCAAAATGGAACAACACACAAAGAGGGAAAGC 4521 ||| || | || ||| | | |||||| ||||||||| | |||||| ||| || Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGA-GGAGAGG 1896 Query 4522 AAATAATCCAGTGTTCCGAGTTATGGGGAAATTCTTGGGGCTCCCAAATATCATCTCAAG 4581 || |||| | || ||| ||||| ||||| || || | ||||| | ||| ||| Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 4582 AACTCATGAGTTCTT 4596 ||| ||||| ||||| Sbjct 1957 AACGCATGAATTCTT 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29688779342344