Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033705.1 Length=11731 Score E Sequences producing significant alignments: (Bits) Value seq40 114 1e-21 seq18 98.7 7e-17 >seq40 Length=949583 Score = 114 bits (126), Expect = 1e-21 Identities = 228/328 (70%), Gaps = 11/328 (3%) Strand=Plus/Plus Query 6538 CTAAGACTATATTTTGTTTTAACTGAATTTCTTATTAAACGATATTACGTTCCCTTATTT 6597 |||||| |||||||| | || || | | | |||||| | |||| |||||| | || Sbjct 1689 CTAAGAGAGTATTTTGTAATTACGGAGTATTTAATTAAATAACATTATGTTCCCCTTTTC 1748 Query 6598 AGTGGATTGACAATGGCAGATGATTTTAACACCGTTATTCGA-AAGTTACTAGATCGGAC 6656 | || | ||||||||||||||||| |||| | || | || || || ||| || Sbjct 1749 AAAGGGATTACAATGGCAGATGATTT-AACAACTTTGACAAAGAAATTGCTGGAT---AC 1804 Query 6657 --CATG-GGACAAGGAG-GCCTGACATACGAATATATCACATTAGCCAATCATTTTGATT 6712 ||| || ||||| | ||||| |||| ||| | |||| ||| || | |||| Sbjct 1805 TTCATCAGGTCAAGGTCTGGCTGAC-TACGGGATCATCTCTATAGCTAATGATATAGATT 1863 Query 6713 ACTCCAAATGGAATAACACTCAACGAGGAAAAGCAAATAATCCTGTCTTTAAAGTTATGG 6772 | ||||||||| | |||| ||||| | | || | |||| | |||||||| |||| Sbjct 1864 ATGAAAAATGGAATGCCCATCAAAGAGGAGAGGGAACGA-TCCTTTTTTTAAAGTGATGG 1922 Query 6773 GTCAATTTTTGGGGTTGCCCAATCTCTTTGTAAGGACTCATGAATTCTTTGAGCAAAGTT 6832 | ||||||| || ||||| || | | ||||| || |||||||||||| | ||| | Sbjct 1923 GCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAACGCATGAATTCTTTAATAAAATTA 1982 Query 6833 TGATCTATTATAATGAAAGAACAGACTT 6860 | ||||||||||| ||||| | ||||| Sbjct 1983 TATTCTATTATAATCAAAGACCTGACTT 2010 >seq18 Length=5623067 Score = 98.7 bits (108), Expect = 7e-17 Identities = 283/421 (67%), Gaps = 17/421 (4%) Strand=Plus/Minus Query 6531 CTGGAACCTAAGACTATATTTTGTTTTAACTGAATTTCTTATTAAACGATATTACGTTCC 6590 ||||| |||||| |||||||| |||| |||| || || ||| | | || || Sbjct 2777371 CTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCC 2777312 Query 6591 CTTATTTAGTGGATTGACAATGGCAGATGATTTTAACACCGTTATTCGAAAGTTACTAGA 6650 ||||| | ||| | || ||||||||||| || | || | || ||| | |||| Sbjct 2777311 ATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGA 2777252 Query 6651 TCGGACCATGGGACAAGGAG-GCCTGACATACGAATATATCACATTAGCCAATCATTTTG 6709 | || |||||||| | | || || | ||| | |||| |||||| | | Sbjct 2777251 TACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAG 2777192 Query 6710 ATTACTCCAAATGGAATAA-CACTCAACGAGGAAAAGCAAATAATCC-TGTCTTTAAAGT 6767 |||| ||||||||| ||| |||||||||| || ||| |||| ||| || || || Sbjct 2777191 ATTATGAAAAATGGAATGCTCAC-CAACGAGGAACAGGGAATGATCCATGT-TTCAAGGT 2777134 Query 6768 TATGGGTCAATTTTTGGGGTTGCCCAATCTC-TTTGTAAGGACTCATGAATTCTTTGAGC 6826 |||||||||||||| || ||||||| ||| | | || ||| ||||||| ||| || Sbjct 2777133 CATGGGTCAATTTTTAGGTCTGCCCAA-CTCAATACTCAGAACTAATGAATT-TTTTAGT 2777076 Query 6827 AAAGTT-TGATCTATTATAATGAAAGAACAGACTTGATGAGAGTTAGAGGA--GGTGAGT 6883 ||| || | ||||||||| || || ||||| ||| || | || | |||| Sbjct 2777075 AAAATTACTTTTTATTATAATCAACGACCAGACCCGATATGATTATGAATAATGGTG--- 2777019 Query 6884 TGATACCAA---CGACGGATGCTAAAGTCTGTTGGAATGGTCAATTGGGAGGATTAGAGG 6940 | ||| || ||| ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct 2777018 TCATAGAAAATTTGACAGATCAGAGAGTATGTTGGAATGGACAATTGGGAGGGCAAGAGG 2776959 Query 6941 G 6941 | Sbjct 2776958 G 2776958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37422965553860