Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013
-12-04] 2,457 sequences; 277,059,195 total letters
Query= NC_033731.1
Length=12548
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 8e-23
seq40 105 5e-19
seq18 89.7 4e-14
>seq5
Length=15084686
Score = 118 bits (130), Expect = 8e-23
Identities = 311/461 (67%), Gaps = 18/461 (4%)
Strand=Plus/Minus
Query 8064 TTCCTTTTGGGTTGATTAATTATACTTCTTCCAGAGGACCTCTTCCA--GCTTATCTAGG 8121
||||||| || |||| |||||| || || ||||| ||||| | |||||||||||
Sbjct 1087334 TTCCTTTAGGATTGACCAATTATGATTATTATAGAGG--CTCTTATATGGCTTATCTAGG 1087277
Query 8122 ATCCAGAACTAAGGAGACTACCAGTGTGATACAGCCATGGGAGAAAGAGTCTAAAGTCCC 8181
|||| |||| || | ||||| ||||||| || ||||| || ||| ||||||| ||
Sbjct 1087276 CTCCAAAACTTCAGAATCGACCAGCTTGATACATCCGTGGGAAAAGGAGACTAAAGTTCC 1087217
Query 8182 TCTTCTTAGACGAGCATTGAAATTACGAGATGCTATTCATTGGTTTGTTAACCCAAAAAC 8241
| |||||| | | || ||||||||||||| | ||||||||||| | || | |
Sbjct 1087216 TGTTCTTAAATGGGCTAGCAAATTACGAGATGTAGTACATTGGTTTGTGGAACCCACTTC 1087157
Query 8242 TAAATTGGCAAAGAGTATCTTATCTGTTCTCAATGGTCTGACT-AATATAGAATGGGATG 8300
||| || || | || || || ||| ||||| | || ||||| ||||| ||||| |
Sbjct 1087156 TAATTTAGCTATCAGCATATTTTCTATTCTCGAGGGATTGACTGGATATA-AATGGTCTT 1087098
Query 8301 ATGGGTTAGAAGGGTATAAAAGGACAGGTTCCAGGATTC-ACAGATTTA--CCAGTTCCA 8357
|| | || | |||| ||||||| | | | || | | ||| ||| | |
Sbjct 1087097 CAGGCATTCTGGGTTTTAAACGGACAGGATGCGGACCTCGTCGGTATTACTCCAAT---A 1087041
Query 8358 GGCAAAGCGCGGGGGGTTACTCCGCAACAAGTC-CCTG-TAAGTTGACTAGATTGAATAC 8415
| |||| | || | || | || |||| || | || |||||| | ||| |||
Sbjct 1087040 GAAAAAGTAATGCTGGCTTTTCTG--ACCAGTCTCCAGCTATGTTGACCCGTATGATTAC 1086983
Query 8416 TACTACGGATACCTTTACAGATTTTAGTGAAGATAATTATGATTTTATGTTCCAAGCTTT 8475
|| ||||| || || |||| ||| | |||||||||||||| |||| || |||
Sbjct 1086982 CACAACGGACACATTACAAGATATTAATTCCGATAATTATGATTTCATGTATCAGAGTTT 1086923
Query 8476 GATTTTGTACTGC-CAAGTAAGTGCAGGAGAATTGCATGAT 8515
||| | | ||| || | | ||||||||||||| |||||
Sbjct 1086922 GATAATAT-TTGCACAGATTACTGCAGGAGAATTGTATGAT 1086883
>seq40
Length=949583
Score = 105 bits (116), Expect = 5e-19
Identities = 240/357 (67%), Gaps = 7/357 (2%)
Strand=Plus/Plus
Query 6271 AGGGAGGTTTTTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTG 6330
||| || || ||| || ||||| |||| | |||||||||||||| || || ||||
Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717
Query 6331 GCTCATAAAGAAGTATTTCGTTCCG--TTACTAAGAGACTTAACAATGGCAGACGACTTG 6388
| || || | ||| ||||| || | ||| || | ||||||||||| || ||
Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT--ACAATGGCAGATGATTTA 1775
Query 6389 AATGATGTCATAAGTAAAATGTTGTCTAGTACATCAGGACAAGGGTTGGATGACTACTCA 6448
| | | | || ||| || || || | ||||||| ||||| ||| |||||||
Sbjct 1776 ACAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGG 1835
Query 6449 GTAGTATCTATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGA- 6507
| | ||||| |||| | ||||||| || |||||||| || ||||| ||||
Sbjct 1836 ATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAG 1893
Query 6508 ATCAAATGATCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCAC 6567
| || |||||| | || | ||||||||| ||||||| ||| ||| |||||| ||
Sbjct 1894 AGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953
Query 6568 TAGGACACATGAGTTTTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTT 6624
|| || ||||| || || | ||| | | |||||| | | |||||||| ||
Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010
>seq18
Length=5623067
Score = 89.7 bits (98), Expect = 4e-14
Identities = 200/288 (69%), Gaps = 13/288 (5%)
Strand=Plus/Minus
Query 6305 AGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATTTCGTTCCGTTACT-AAG 6363
|||||||||||||| ||||| || | || ||||| | | || || || ||| | |||
Sbjct 2777361 AGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAG 2777302
Query 6364 AGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAGTACATC 6423
|| | || |||||||| ||||| | | |||||| || | || || | ||
Sbjct 2777301 GGA-ATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCCTC 2777243
Query 6424 AGGACAAGGGTTGGATGACTA-CTCAGTAGTATCTATTTCTAACCACTTAGATTACGAGA 6482
||||||| ||| || || | ||| | ||||| |||| || ||||||| || |
Sbjct 2777242 GGGACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAAA 2777183
Query 6483 AATGGAACAATCACCAAAGGAAGGAATCA---AATGATCC-TGTATTCAGAGTGATGGGT 6538
||||||| ||||||| | ||||| || |||||||| ||| |||| || ||||||
Sbjct 2777182 AATGGAATGCTCACCAACG--AGGAA-CAGGGAATGATCCATGT-TTCAAGGTCATGGGT 2777127
Query 6539 CAATTTTTGGGAAAGCCTAACTTATTCACT-AGGACACATGAGTTTTT 6585
|||||||| || ||| |||| | | ||| || || |||| |||||
Sbjct 2777126 CAATTTTTAGGTCTGCCCAACTCAAT-ACTCAGAACTAATGAATTTTT 2777080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40037293288576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |