Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq5 118 8e-23 seq40 105 5e-19 seq18 89.7 4e-14 >seq5 Length=15084686 Score = 118 bits (130), Expect = 8e-23 Identities = 311/461 (67%), Gaps = 18/461 (4%) Strand=Plus/Minus Query 8064 TTCCTTTTGGGTTGATTAATTATACTTCTTCCAGAGGACCTCTTCCA--GCTTATCTAGG 8121 ||||||| || |||| |||||| || || ||||| ||||| | ||||||||||| Sbjct 1087334 TTCCTTTAGGATTGACCAATTATGATTATTATAGAGG--CTCTTATATGGCTTATCTAGG 1087277 Query 8122 ATCCAGAACTAAGGAGACTACCAGTGTGATACAGCCATGGGAGAAAGAGTCTAAAGTCCC 8181 |||| |||| || | ||||| ||||||| || ||||| || ||| ||||||| || Sbjct 1087276 CTCCAAAACTTCAGAATCGACCAGCTTGATACATCCGTGGGAAAAGGAGACTAAAGTTCC 1087217 Query 8182 TCTTCTTAGACGAGCATTGAAATTACGAGATGCTATTCATTGGTTTGTTAACCCAAAAAC 8241 | |||||| | | || ||||||||||||| | ||||||||||| | || | | Sbjct 1087216 TGTTCTTAAATGGGCTAGCAAATTACGAGATGTAGTACATTGGTTTGTGGAACCCACTTC 1087157 Query 8242 TAAATTGGCAAAGAGTATCTTATCTGTTCTCAATGGTCTGACT-AATATAGAATGGGATG 8300 ||| || || | || || || ||| ||||| | || ||||| ||||| ||||| | Sbjct 1087156 TAATTTAGCTATCAGCATATTTTCTATTCTCGAGGGATTGACTGGATATA-AATGGTCTT 1087098 Query 8301 ATGGGTTAGAAGGGTATAAAAGGACAGGTTCCAGGATTC-ACAGATTTA--CCAGTTCCA 8357 || | || | |||| ||||||| | | | || | | ||| ||| | | Sbjct 1087097 CAGGCATTCTGGGTTTTAAACGGACAGGATGCGGACCTCGTCGGTATTACTCCAAT---A 1087041 Query 8358 GGCAAAGCGCGGGGGGTTACTCCGCAACAAGTC-CCTG-TAAGTTGACTAGATTGAATAC 8415 | |||| | || | || | || |||| || | || |||||| | ||| ||| Sbjct 1087040 GAAAAAGTAATGCTGGCTTTTCTG--ACCAGTCTCCAGCTATGTTGACCCGTATGATTAC 1086983 Query 8416 TACTACGGATACCTTTACAGATTTTAGTGAAGATAATTATGATTTTATGTTCCAAGCTTT 8475 || ||||| || || |||| ||| | |||||||||||||| |||| || ||| Sbjct 1086982 CACAACGGACACATTACAAGATATTAATTCCGATAATTATGATTTCATGTATCAGAGTTT 1086923 Query 8476 GATTTTGTACTGC-CAAGTAAGTGCAGGAGAATTGCATGAT 8515 ||| | | ||| || | | ||||||||||||| ||||| Sbjct 1086922 GATAATAT-TTGCACAGATTACTGCAGGAGAATTGTATGAT 1086883 >seq40 Length=949583 Score = 105 bits (116), Expect = 5e-19 Identities = 240/357 (67%), Gaps = 7/357 (2%) Strand=Plus/Plus Query 6271 AGGGAGGTTTTTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTG 6330 ||| || || ||| || ||||| |||| | |||||||||||||| || || |||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6331 GCTCATAAAGAAGTATTTCGTTCCG--TTACTAAGAGACTTAACAATGGCAGACGACTTG 6388 | || || | ||| ||||| || | ||| || | ||||||||||| || || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT--ACAATGGCAGATGATTTA 1775 Query 6389 AATGATGTCATAAGTAAAATGTTGTCTAGTACATCAGGACAAGGGTTGGATGACTACTCA 6448 | | | | || ||| || || || | ||||||| ||||| ||| ||||||| Sbjct 1776 ACAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGG 1835 Query 6449 GTAGTATCTATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGA- 6507 | | ||||| |||| | ||||||| || |||||||| || ||||| |||| Sbjct 1836 ATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAG 1893 Query 6508 ATCAAATGATCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCAC 6567 | || |||||| | || | ||||||||| ||||||| ||| ||| |||||| || Sbjct 1894 AGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953 Query 6568 TAGGACACATGAGTTTTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTT 6624 || || ||||| || || | ||| | | |||||| | | |||||||| || Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010 >seq18 Length=5623067 Score = 89.7 bits (98), Expect = 4e-14 Identities = 200/288 (69%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 6305 AGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATTTCGTTCCGTTACT-AAG 6363 |||||||||||||| ||||| || | || ||||| | | || || || ||| | ||| Sbjct 2777361 AGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAG 2777302 Query 6364 AGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAGTACATC 6423 || | || |||||||| ||||| | | |||||| || | || || | || Sbjct 2777301 GGA-ATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCCTC 2777243 Query 6424 AGGACAAGGGTTGGATGACTA-CTCAGTAGTATCTATTTCTAACCACTTAGATTACGAGA 6482 ||||||| ||| || || | ||| | ||||| |||| || ||||||| || | Sbjct 2777242 GGGACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAAA 2777183 Query 6483 AATGGAACAATCACCAAAGGAAGGAATCA---AATGATCC-TGTATTCAGAGTGATGGGT 6538 ||||||| ||||||| | ||||| || |||||||| ||| |||| || |||||| Sbjct 2777182 AATGGAATGCTCACCAACG--AGGAA-CAGGGAATGATCCATGT-TTCAAGGTCATGGGT 2777127 Query 6539 CAATTTTTGGGAAAGCCTAACTTATTCACT-AGGACACATGAGTTTTT 6585 |||||||| || ||| |||| | | ||| || || |||| ||||| Sbjct 2777126 CAATTTTTAGGTCTGCCCAACTCAAT-ACTCAGAACTAATGAATTTTT 2777080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40037293288576