Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq48504 159 7e-37 >seq48504 Length=3620 Score = 159 bits (176), Expect = 7e-37 Identities = 242/337 (72%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| || ||||||| |||||||| || Sbjct 2617 CCCGATAAGGGGAGTGAAATAGACC-TGAAACCGAATGCTTACAAGCAGTCGGAGCAGAC 2559 Query 64 --TGAT--TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAG 119 | || || |||||||||| ||||||| |||||| | | ||| ||||| | | || Sbjct 2558 ATTTATGTTCTGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTT-TATCTAG 2500 Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178 | || ||||| || ||| ||| || || ||||||||| || || ||||||| Sbjct 2499 CAAGCTTAAGCCGTT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGATTT 2444 Query 179 -AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| | | ||||| ||||||| |||||||| ||| | |||||||||| | | Sbjct 2443 TAGTTAGATGAATTAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGTTGAAGGTGGAG 2384 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 ||| | || ||||||||||| | |||||||| | |||||| | || | Sbjct 2383 TAATATCCGCTGAAGGACCGAACCCACTACTGTTGAAAAAGTAGGGGATGAGCTGTGGCT 2324 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||| ||||||||| ||| |||||| || Sbjct 2323 AGGGGTGAAAGGCTAATCAAACTCGGATATAGCTGGT 2287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972014395904