Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24603 163 1e-37 seq45584 131 7e-28 >seq24603 Length=4653 Score = 163 bits (180), Expect = 1e-37 Identities = 113/128 (88%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | |||||| ||||||||||||||||||||||| || || |||||||||||||| Sbjct 3209 AGCAGACCTGTTGTTACCCGAAAGATGGTGAACTATGCTTGCGTATGGTGAAGCCAGAGG 3150 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||||| | |||| ||||| |||||||||||||||||||| || |||| Sbjct 3149 AAACTCTGGTGGAGGCTTGAAGCGATTCTGACGTGCAAATCGATCGTCAAACGTGAGTAT 3090 Query 676 AGGGGCGA 683 |||||||| Sbjct 3089 AGGGGCGA 3082 Score = 158 bits (174), Expect = 5e-36 Identities = 140/174 (80%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| ||||||||||||||| | ||| ||| |||| | | | ||||| | Sbjct 3946 TTCAAAGAGTCGGATTGTTTGGGAATGCAATCCAAAAAGGGTGGTAGACTCCATCTAAGG 3887 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 3886 CTAAATATAAGCAAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGTACT 3827 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 || | |||||||| |||| ||||||||||| |||||||||| || ||| ||| Sbjct 3826 CTGAAGAGAGAGTT-CAAAGAACGTGAAATTGCTGAAAGGGAAACGTTTGAAAC 3774 >seq45584 Length=6096 Score = 131 bits (144), Expect = 7e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| || Sbjct 5449 TGTGACCCGAAAGATGGTGAACTATGCCTGATCAGGTTGAAGTCAGGGGAAACCCTGATG 5508 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || ||| ||||| ||||||||||||| |||| | ||||| |||||||||| Sbjct 5509 GAGGACCGAAGCAATTCTGACGTGCAAATCGATTGTCAGAATTGGGCATAGGGGCGA 5565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078267762350