Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq48504 132 7e-29 >seq48504 Length=3620 Score = 132 bits (146), Expect = 7e-29 Identities = 181/248 (73%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||||| ||| || | | ||| ||| Sbjct 1354 CTTAATCTTCCAGCACTGGGCAGGCGTCAGACCCTATACTTCGTCT-ATTGACTTTGCAG 1412 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| ||| | | ||| ||| | | | Sbjct 1413 AGCCCTGTGTTTTTAATAAACAGTCGCTACCCCCTAGTTTGTGCCACCTATAAATGGTTG 1472 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | ||||| || | || || ||||||||||||||| | || |||||| | Sbjct 1473 CC----CATTCAC----AG-GTCATCC-TTCTCCCGAAGTTACAGATGCAATTTGCCTAG 1522 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || |||| | | | ||||| |||| ||||||||| |||||||||||||| Sbjct 1523 TTCCTTCAGCATCGTTCTCTCAAGCGCCTAGGTATACTCTACCTGTCCACCTGTGTCGGT 1582 Query 241 TTACGGTA 248 || |||| Sbjct 1583 TTGGGGTA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693856747661