Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq24603 334 1e-89 seq576 289 5e-76 seq28803 205 2e-50 seq30280 93.3 7e-17 seq48504 84.2 4e-14 >seq24603 Length=4653 Score = 334 bits (370), Expect = 1e-89 Identities = 232/264 (88%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 498 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTN----------- 546 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||| Sbjct 547 TATTGGGTGAACAATCCAACACTTATTGAAATCTGCTTCAATATGATAGGAAGAGCCGAC 606 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 666 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCA-AATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| |||||||| || | || | | || ||||||||||||||| Sbjct 667 TGTGGTAACTTTTCTGACACCTCTACACTGATAACTCCCAGTTTGTAAAGGATCGATAGG 726 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||||||||||||||||||||||| Sbjct 727 CCACACTTTCATGGTTTGTATTCA 750 >seq576 Length=2063 Score = 289 bits (320), Expect = 5e-76 Identities = 189/207 (91%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 387 CACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 329 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||| |||||| ||||| |||||| |||||||||||||||||| Sbjct 328 GAAAGGGTGAACAATCCTACGCTTTGTGAATTTTGCTTCACAATGATAGGAAGAGCCGAC 269 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 268 ATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCC 209 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||||||| ||||||| || Sbjct 208 TGTGGTAACTTTTCTGACACCTCTTGC 182 >seq28803 Length=3199 Score = 205 bits (226), Expect = 2e-50 Identities = 131/143 (92%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| Sbjct 1467 GGGTGAACAATCCTACGCTTTGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCG 1408 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1407 AAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTG 1348 Query 216 GTAACTTTTCTGGCACCTCTAGC 238 |||||||||||| ||||||| || Sbjct 1347 GTAACTTTTCTGACACCTCTTGC 1325 >seq30280 Length=2535 Score = 93.3 bits (102), Expect = 7e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 222 TGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGC 164 >seq48504 Length=3620 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| |||||||||||||||||| || ||| | || ||||| Sbjct 607 ACCAAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGC 666 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| ||| |||| | | | ||| || ||||||||||||| | || Sbjct 667 CGAACCCTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCA 723 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || |||||||||| |||||||| || |||| |||||||| | ||| |||| Sbjct 724 AACGATTTCGTCGCTATGGACGCTTGGAAATCATCAGCCTGTTATCCCCGGAGTACCTTT 783 Query 224 T 224 | Sbjct 784 T 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853710012192