Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq48504 342 2e-91 >seq48504 Length=3620 Score = 342 bits (378), Expect = 2e-91 Identities = 372/484 (77%), Gaps = 15/484 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTG---TAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||| | | | | || ||||||||||||| ||||||||| || Sbjct 2464 CGAGTCTGAATAGGGCGATTTTAGTTAGATGAATTAGACCCGAAACCGAGTGATCTAGCC 2405 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| |||||||| |||| | | ||| ||| |||||||||||| ||||||||| Sbjct 2404 ATGGCCAGGTTGAAGGTGGAGTAATATCCGCTGAAGGACCGAACCCACTACTGTTGAAAA 2345 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 | ||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||| Sbjct 2344 AGTAGGGGATGAGCTGTGGCTAGGGGTGAAAGGCTAATCAAACTCGGATATAGCTGGTTC 2285 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCA-AG-TATCACCATCGGGGGTAGAGCACTGTT 236 || ||||| |||||||||||| || | | || || ||| ||| |||||||||||| Sbjct 2284 TCCGCGAAATCTATTTAGGTAGAGCGTTATAGCGATTACCGTCGAAGGTAGAGCACTG-G 2226 Query 237 ATG-GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 ||| ||||||||||| | |||||||||||| ||||||||||||| | || Sbjct 2225 ATGAGCTAGGGGGTCCTACAGACTTACCAAACTCAACCAAACTCCGAATGTCGACGAG-- 2168 Query 296 TTACCGC--GGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 ||| || | || || |||||||||||||||| | ||||||| || | || Sbjct 2167 -TACAGCATAGCAGACAGACTATGGGTGCTAAGGTCCATAGTCGAGAGGGAAAAAGCCCA 2109 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| || |||||| ||| |||| | |||||| | || || || || | || Sbjct 2108 GACCGCCATCTAAGGTCCCTAAATCATGACTAAGTGTTA--AAGGATGTGGGAAAACCAA 2051 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| ||||||||||||||| |||||||||| ||||||||||| |||||| |||||||| Sbjct 2050 AACAACTAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACT 1992 Query 474 AGTC 477 |||| Sbjct 1991 AGTC 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688235529728