Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq24603 392 1e-106 seq57702 168 2e-39 >seq24603 Length=4653 Score = 392 bits (434), Expect = 1e-106 Identities = 223/227 (98%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1318 GATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGG 1377 Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 1437 Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 1497 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1498 ATTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACATCACTTTCTG 1544 Score = 259 bits (286), Expect = 2e-66 Identities = 196/230 (85%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG-----AAACGG--CTCC 240 ||||| ||| ||| || || |||||||||||||||| || | ||| | |||| Sbjct 1087 TAAGTTAAAGAACAATGAGAGTAGTGGTATTTCACTGTCGGCCCCATTAAAGTGACCTCC 1146 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||||||||||||||| || ||| |||||||| |||||||||||||||||| Sbjct 1147 CACTTATTCTACACCTCTCATGTTCTTTGACAAAGTCAACAAAGAGTCAAGCTCAACAGG 1206 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1207 GTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATTG 1266 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 || || ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1267 TATGTAAGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 1316 Score = 127 bits (140), Expect = 7e-27 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| |||||||||| |||| |||||| ||||| ||||||||||||||| Sbjct 783 CTTTTGCTCTACTTGAGATTTCTGGTCTCAATGAGTTGCCCTTTGGACACCTGCGTTATT 842 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCC 99 |||||||||||||||||||||||||||||||| Sbjct 843 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCC 875 >seq57702 Length=2397 Score = 168 bits (186), Expect = 2e-39 Identities = 111/123 (90%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||| |||||||||||||||||||||||||||| || | Sbjct 810 CAGGGTCTTCTTTCCTCGCTAGCCTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCACTTG 751 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 750 ATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGTGTCACTAATTAGATG 691 Query 417 ACG 419 ||| Sbjct 690 ACG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633879461536