Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq48504 345 1e-92 seq29628 80.6 9e-13 >seq48504 Length=3620 Score = 345 bits (382), Expect = 1e-92 Identities = 418/567 (74%), Gaps = 23/567 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||| ||||| || |||||||||| ||| ||| ||| || ||||| | | ||||| | Sbjct 850 TCGTCTTGTCAGACTCGCAGTCAGGCTAGCTTATGCCATTGCACTCTAATAGTTGATTTC 909 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | |||| ||||| |||| | | ||||||||||||| ||||||||| | ||||||||| Sbjct 910 CGACCAACCTGAGCTAACCATCGCGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 968 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCC 178 || ||||||||||||| ||| |||| | | || ||| || || | ||||||||||| Sbjct 969 GTCAAACTACCCACCATGCATTGTCTCGGATCCTGATTCAAGGATCGCGGTTAGATATCA 1028 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | || | ||||| |||| ||||||||| || ||| |||| ||||| Sbjct 1029 AGAATCAAAAGGGCGGTATCTCAAGGGTGACTCCACAGTGGCTTGCGCCACCGCTTCATA 1088 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||||||||||||||| |||| || ||| ||| | | |||||||||| ||||| Sbjct 1089 GTCTCCCACCTATCCTGCACATCTAATTCCTAATACCAGTGCAAAGCTATAGTAAAGGTT 1148 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| ||||| ||| ||||||| || | | ||||||| | Sbjct 1149 CACGGGGTCTTTCCGTCTAACCGCGGGAACTCCGCATCTTCACGGAGAATTCAATTTCGC 1208 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | | | | |||||||| ||| | |||||||||||||||||| ||||||||||||| Sbjct 1209 TGAGTCGATACTGGAGACAGCGGGGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTAC 1268 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| || |||||||| |||||||| |||||| || Sbjct 1269 CCGACAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACGGCCGCCGTTCACTGGGACT 1328 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 |||||| || | | | ||| ||||||||| |||||||||| Sbjct 1329 TCAATT----------CAGAGCTTG---------CACCCCTCCTCTTAATCTTCCAGCAC 1369 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 1370 TGGGCAGGCGTCAGACCCTATACTTCG 1396 >seq29628 Length=1620 Score = 80.6 bits (88), Expect = 9e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 166 AGGTTAGATATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCG 225 |||||||| |||| ||| || ||||||||||||| |||||||| | |||||| Sbjct 1514 AGGTTAGAATTCCAGTACAAGAAGGGTGGTATTTCAACGTTGACTCCACGATGCCTAGCG 1573 Query 226 TGGCCGCATCATAGTCTCCCACCTATCCTACACA 259 |||| ||| |||||||||||||||||||||| Sbjct 1574 ACACCGCTTCAAAGTCTCCCACCTATCCTACACA 1607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701025192832