Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq71022 282 3e-71 seq1270 145 6e-30 >seq71022 Length=3779 Score = 282 bits (312), Expect = 3e-71 Identities = 1172/1847 (63%), Gaps = 39/1847 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| || || || || |||||| | || | || || | | ||| ||||| || || Sbjct 773 ATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATACATTCCAGT 832 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | |||| ||| | | || || || || | || |||| ||||||| ||||| Sbjct 833 TTTTAAACCAGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCCATAATTGGGCTC 892 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||| ||||| || || || ||||| |||||||||| | || |||||||||||||| Sbjct 893 GGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGATCTGCAGCCAT 952 Query 65257 GTCAATGATACGACGT--CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 | ||| | || | |||| | ||||| ||||| ||||||| ||| | ||| Sbjct 953 TTTTATG--GCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTCACGAATGTCA 1010 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 | |||||| || ||||| | || | ||||| | || | ||| ||| ||| Sbjct 1011 AATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTTATTTTTCATA 1070 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || ||| ||| | || | | || || || ||| ||| |||||| || ||| Sbjct 1071 TCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGATTGACAACCTGG 1130 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || || || ||||| || |||| ||| || ||| |||||||| |||||| Sbjct 1131 AATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTCAAATGATTCA 1190 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 |||| || |||||||| ||||| || || |||||||| || || | | | || ||| Sbjct 1191 TTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGTAGGGAATTT 1250 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA------TCGGT 65608 | | || | | |||| || || |||||| ||||| ||||| | | ||| Sbjct 1251 CTGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATAAATCTGTTGGT 1310 Query 65609 TTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 || | ||| |||||| || | |||| | || |||| | || | Sbjct 1311 TTTTTGTC------------CCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAG 1358 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCG 65728 || || | || || || || | ||| | || | || | || | || Sbjct 1359 CCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCA 1418 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 || ||||||| ||||||||||| || | || | | | || || ||||||||||| Sbjct 1419 CCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAA 1478 Query 65789 GGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 || || ||| |||| ||| | || |||| || ||||| ||||| || ||||||||| Sbjct 1479 GGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGA 1538 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 || | || ||| || ||| || || || | || || | |||| ||| || || | Sbjct 1539 TGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTA 1598 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968 |||||||| || || | || | ||||| | |||||| ||| |||| Sbjct 1599 TTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATC-AAACGTTT- 1656 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 || ||| |||||| | | ||||| || || | || ||| Sbjct 1657 ----TTTCATTAGT---------AACAAACATATTCAAGGCAATTGAGGCCAAATTACAG 1703 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | || || | | ||| |||||||| || || |||| || ||||| Sbjct 1704 ACGGCAACTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTA 1763 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 ||||| || | ||| ||||| ||| || | || || || || ||||| | ||| || Sbjct 1764 ATGGTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAA 1823 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || || || || |||||||| || ||||| ||||| ||| || | ||||||| | | Sbjct 1824 GGCGTACCCGTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATC 1883 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 || | | ||||| ||| || ||| ||| | | ||| || |||||| Sbjct 1884 TGGCGAATAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCC 1943 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 ||| ||| |||| || |||| || || ||||||| ||| ||| Sbjct 1944 CATGTGTCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGAC 2003 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || | ||||||| | ||| || ||||| |||||| | || | ||| || || | | Sbjct 2004 TCGACCCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTT 2063 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || |||| |||||| |||||| |||||||| || | ||| | ||||| Sbjct 2064 CCTTCTTCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAA 2123 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 ||||| || || ||||| || | ||| | || ||||| ||||| ||||| ||| Sbjct 2124 GGTTCAAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGA 2183 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || ||||||| | || |||||||| ||||| || || || || |||| || || ||| Sbjct 2184 GCCGTATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCG 2243 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 |||| | ||| ||||| ||| ||||||||| || ||||| || || || | Sbjct 2244 GCGATATAAGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGAT 2303 Query 66629 TTCGAGA-TGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTT 66687 || || | | || ||||| | || || | | ||||| ||||| ||| | | Sbjct 2304 TTAGATACTAGC-GCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACT 2362 Query 66688 GATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGT 66747 || |||| | | |||| || | || || || ||||| || | || | || Sbjct 2363 CATCGTCAATAAGAAGCAAGATGACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGT 2422 Query 66748 GGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATC 66807 || | || || || || ||| | ||||| || |||||||| ||| ||| || Sbjct 2423 AGGCGACGCATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTC 2482 Query 66808 AATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGAC 66867 ||||| || |||||||| || | || || ||||| | | || || || || || Sbjct 2483 AATGTCCTCCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCAC 2542 Query 66868 CAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 | |||| || | || || || || ||||||| ||| |||| Sbjct 2543 AACTTTCCCCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGA 2589 >seq1270 Length=21014 Score = 145 bits (160), Expect = 6e-30 Identities = 344/510 (67%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCC-TTCAATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGA 61491 ||| || |||||||| |||||| |||| |||| | |||| | | | || ||||| Sbjct 10262 GAAGGCCGATTGGGCTATTCAAT-GGATATGCAGTCAGAACGCCAAT-TACGGAGAACGC 10319 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | |||||||| | ||||| || | || ||||| ||| ||||| | || || Sbjct 10320 ATTATAGCATTTGCTGCCGTCGAAGGAATTTTCTTCAGCGGAAGTTTTGCTTCCATTTTC 10379 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||| | ||||||||||| |||||||| |||||||| ||| || || | || || || Sbjct 10380 TGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATTCTCAAACGAACTCATTTCTCGT 10439 Query 61612 GACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 || || || | || || || ||||| || || | ||| || || | || | Sbjct 10440 GATGAAGGATTACACTGCGACTTTGCCTGCCTTA-TGTTC---CGTTACTTAGTCCAGAA 10495 Query 61671 TCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT 61730 || | | || | | || ||| | ||||| || || || ||||||||||| Sbjct 10496 ACCAACAAAAGAAAGAATCATCGAAATTATCCGTGAAGCTGTTGAAATTGAACAGGAATT 10555 Query 61731 TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTA 61790 | || || || || || || | | ||||||||||| ||| ||||| | || Sbjct 10556 CTTAACAGATGCCTTACCAGTTGATATGCTTGGCATGAATTGCAAACTTATGTCAGAATA 10615 Query 61791 TATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATAC 61850 ||||||||| ||||| ||| | || ||| | || ||||| | || || || || || Sbjct 10616 TATTGAATTCGTTGCTGACAGACTATTGATAGAATTGGGAGTCGGACGAATTTACAACAC 10675 Query 61851 GAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGA 61910 ||||| ||||| |||||||||| ||||| || || |||||||||||||| ||||| Sbjct 10676 TAAAAATCCATTCAATTTCATGGAATCTATTTCACTAGAAGGCAAGACGAATTTCTTCGA 10735 Query 61911 GAAACGTGTAGGCGACTATCA-ACGTTTGG 61939 || || ||||| ||||| | |||||| Sbjct 10736 AAAGAAAGTCGGCGAATATCAGAAGTTTGG 10765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397176703262480