Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq19326 183 6e-44 seq28529 129 1e-27 >seq19326 Length=6529 Score = 183 bits (202), Expect = 6e-44 Identities = 128/146 (88%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||||||||||||||||||||||||| | ||||||||||| |||||| | ||| Sbjct 2541 TAGACGCGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTTTGGTAACACAAAGTGG 2482 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||| Sbjct 2481 AGGACCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGC 2422 Query 311 CAATCAAACTGGGAAATAGCTCGTAC 336 |||||||||||||| ||||||||||| Sbjct 2421 CAATCAAACTGGGAGATAGCTCGTAC 2396 Score = 113 bits (124), Expect = 9e-23 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 15 GGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74 |||||||||||| |||||| ||| ||||||||||||||||||||| | || ||||| Sbjct 2871 GGGTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCCCACAAGTTGGGTGA 2812 Query 75 CGGCGTGCCTTTTGCATAATGAGCCTA 101 ||||||||||||||||||||||||||| Sbjct 2811 CGGCGTGCCTTTTGCATAATGAGCCTA 2785 >seq28529 Length=1253 Score = 129 bits (142), Expect = 1e-27 Identities = 232/332 (70%), Gaps = 14/332 (4%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTC- 69 ||||| |||||||||| |||||| | | || ||||| | || ||||| | || Sbjct 16 AGGGGAGTGAAATAGATCCTGAAATCAAGTGCTTACAAACAGTTGGAGCTCTATATTTAA 75 Query 70 -----GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGG 124 |||||| |||| |||||||||||||| | | ||||||| || | ||| || Sbjct 76 TATAGGGTGACAGCGTACCTTTTGCATAATGGGTCAGCGAGTTAATC-TATGGAGCAAGC 134 Query 125 TTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTG 183 ||||| || ||| ||| | || |||||| || ||||| |||||| |||| Sbjct 135 TTAAGCCGTT-AGGTG---TAGGCATAGCGAAAGCAAGTCTTAATAGGGCGTTTTAGTTT 190 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | ||||| ||||||| |||||||| || || ||| |||||| | |||| Sbjct 191 TATGGATTAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTGTAGTAAGAT 250 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAA-AGTTTTCGGATGACTCGCGGGTAGGGG 302 ||||||| |||||| || | |||| || ||| || |||||| | | | |||||| Sbjct 251 ACACTGGAGGATCGAACCAGTTACTGTTGCAATAGTATT-GGATGAGTTGTGATTAGGGG 309 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||| |||||||||| || Sbjct 310 TGAAAGGCCAATCAAACTTGGAAATAGCTGGT 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972511302144