Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4287 127 3e-27 seq17296 102 1e-19 >seq4287 Length=1260 Score = 127 bits (140), Expect = 3e-27 Identities = 162/211 (77%), Gaps = 13/211 (6%) Strand=Plus/Minus Query 19 TAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAA 78 ||||||| ||||| || ||||||| | |||||| |||||| || ||| | | |||| Sbjct 928 TAGTCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-CCAAGTTCATGTG-AACAG 872 Query 79 TTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT-ACCCGGACCTGTCGGC 135 || || | | ||||| | || || || | |||| | || |||||||||| |||| Sbjct 871 TTTCAGTCCACAATCCCAAGCATGA--AAGTGGTTCAGCGGTTTACCCGGACCTCTCGGT 814 Query 136 CAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 | ||| ||| || ||||| ||| | || |||||||||||||| |||||| |||||||| Sbjct 813 CTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTGCAGCCCAGGACATCTAA 757 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||| ||||| || Sbjct 756 GGGCATCACAGACCTGTTATTG-CTCAATCT 727 >seq17296 Length=1142 Score = 102 bits (112), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||| |||| |||| || |||| | |||||| | |||||||||| || | Sbjct 117 GTACAAAGATCAGGGTCGTAATCAATGCAAGCTAG-TGACTCACACTTACTAGGAGTT-C 174 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||| | | ||| || || | | ||||| | | || | | | |||| Sbjct 175 CTGGTTCATGTG-AACTTTTTCAGTCCACAATCCCAACTAGGAAGCTGGCTAAGTGATTT 233 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||| |||| ||||| | | ||||| | ||| |||| | ||||||| | Sbjct 234 CCCAATCCTCTCGGATAAGGTAACA----CGTTGTCAGCTTCATTGTAACTCGCGTGCCG 289 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||||||||||||||||| |||||||||||| ||||| Sbjct 290 CCCAGAACATCTAAGGGCATCACGGACCTGTTATTG-CTCAA 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751783803055