Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11587 134 6e-29 >seq11587 Length=1097 Score = 134 bits (148), Expect = 6e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| | |||||| ||| ||||||||||| | ||||||| ||||||| Sbjct 334 GAGTCATGTTGCTTGATAGTGCAGCATTAAGTGGGAGGTAAACTCCTTCTAAGGCTAAAT 393 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| | ||||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 394 ATTACCATGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAAT 453 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 ||||||| ||| || |||||||| ||| Sbjct 454 AGAGAGTCAAATAGTACGTGAAACTGT 480 Score = 84.2 bits (92), Expect = 9e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 ||||||| | ||||||||||||| ||||||| |||| ||||| |||||| |||| | Sbjct 538 AAATATTACCATGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAATCACTCT 597 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 | | ||||||| ||| || |||||||| ||| Sbjct 598 GAATAGAGAGTCAAATAGTACGTGAAACTGT 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079363428350