Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq19326 176 4e-42 seq29512 80.6 3e-13 >seq19326 Length=6529 Score = 176 bits (194), Expect = 4e-42 Identities = 143/173 (83%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||||| || ||||||| |||||||||| |||||||||||||||| ||| Sbjct 3320 GGCGGATGCCTAGGCTTTCAGAGGCGACGAAGGACGTGGTAAGCTGCGAAAAGCTCGGGG 3261 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| |||||||||||| |||| |||||||||||||||||| || ||| ||| Sbjct 3260 GATTGGCACACACGAATTGATCCCGAGATGTCCGAATGGGGCAACCCGGCATGTTGAAGA 3201 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| ||| ||| | || ||| || ||||||||||||||||||| Sbjct 3200 CATGTCACTCCGCAAGGAG---AGCAAACCCGGAGAACTGAAACATCTAAGTA 3151 >seq29512 Length=4374 Score = 80.6 bits (88), Expect = 3e-13 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| ||| | |||||| |||||||||| | ||||||| ||||| |||||| Sbjct 465 TGGATGCCTTGGCGTTAATAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTTCGGGGA 406 Query 70 -TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | | || ||||| |||| ||||||||||| ||||| Sbjct 405 ATTGTCA-ACAAGTTTTAATCCGAAGATTTCCGAATGGGGAAACCC 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476662921937