Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq19326 197 4e-48 >seq19326 Length=6529 Score = 197 bits (218), Expect = 4e-48 Identities = 184/234 (79%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 121 GTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 |||||||||| | ||||||| | |||| ||| ||| ||||| |||||| | | Sbjct 5000 GTGAAATCCCAGAGCTTAACTTTGGAACTGCTTTTAAAACTGCTAATCTAGAGATTAAAA 4941 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 |||| | |||||||| |||||| ||||||| |||| |||| |||||||||||| | Sbjct 4940 GAGGATAGAGGAATTCCTAGTGTAGAGGTGAAATTCGTAAATATTAGGAGGAACACCAGT 4881 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| | |||| ||| |||||||| | | |||||||||||||||||||| Sbjct 4880 GGCGAAGGCGTCTATCTGGTTTAAGTCTGACGCTGAGACGCGAAAGCGTGGGGAGCAAAC 4821 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG 354 |||||||||||||||||||||||||||| |||||||| |||| ||| ||||| Sbjct 4820 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGCTAACTCGTTTTTGGG 4767 Score = 192 bits (212), Expect = 2e-46 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 5267 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 5208 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| || || |||||| | |||||| ||| |||||||| | Sbjct 5207 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGTCAGTGGTGAAATCTC 5148 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| | || ||| ||| |||||| | || |||| ||| | || || Sbjct 5147 ATAGCTTAACTATGAAACTGCCATTGATACTGCAGGTCTTGAGTAAAGTAGAAGTGGCTG 5088 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| ||||||| ||||||||| ||||||| |||||||||| ||||||||| Sbjct 5087 GAATAAGTAGTGTAGCGGTGAAATGCATAGATATTACTTAGAACACCAATTGCGAAGGCA 5028 Query 251 G 251 | Sbjct 5027 G 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289217285408