Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq28529 127 3e-27 seq19326 105 9e-21 >seq28529 Length=1253 Score = 127 bits (140), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 14/218 (6%) Strand=Plus/Minus Query 32 CCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCC 91 || ||||| || |||||| || || ||| | ||||||||||||||||||||||||| | Sbjct 1253 CCCTATACTTCCACTTAC-GTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCTACT 1195 Query 92 CTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGT-GGCACCCCTT 150 | ||||| | ||| ||| | ||| | ||| | | |||| ||| ||||| Sbjct 1194 CCCTATTTTGTGCCACCTAC-------CAATA----GTTGCCTAACAGTAGGCTACCCTT 1146 Query 151 CTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTT 210 ||||||||||||| || | |||||||| |||||| | || ||| | ||| |||| Sbjct 1145 CTCCCGAAGTTACAGGTATAATTTGCCGAGTTCCTTCAACATCATTCTTTC-AACACCTT 1087 Query 211 AGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| |||||| | ||||| |||||||||||||||| Sbjct 1086 AGTATACTCTACTTATCCACCAGTGTCGGTTTACGGTA 1049 >seq19326 Length=6529 Score = 105 bits (116), Expect = 9e-21 Identities = 172/251 (69%), Gaps = 29/251 (12%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCG------TC- 53 |||| ||||||| ||||||||||| ||||| || ||||| | ||| | || Sbjct 1144 CTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACTGCNCTATACTGCATCTTTCG 1203 Query 54 --TTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACC 111 || ||| | ||||||||||| ||||||||||| | || || ||||| ||||| Sbjct 1204 ATTTTGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTTACTGCGGCCACC 1263 Query 112 ACCAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCAT 171 | ||| | |||| | ||||||||||||||||| | | || Sbjct 1264 ATT-GCTGA-------------------TGGCGTCTCTTCTCCCGAAGTTACGAGACTAT 1303 Query 172 TTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231 |||||| | ||||||||||| ||||| | | | |||||| ||||||| | ||| ||| Sbjct 1304 TTTGCCTAGTTCCTTAACCATGATTCACTCTAGCACCTTAGGATTCTCTCCTCGACTACC 1363 Query 232 TGTGTCGGTTT 242 ||||||||||| Sbjct 1364 TGTGTCGGTTT 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694200362821