Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq19326 87.8 2e-15 seq28529 82.4 7e-14 >seq19326 Length=6529 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/103 (79%), Gaps = 10/103 (10%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAG-TG------- 111 ||||| |||||||||||| |||||||||| |||||||||| |||||| || Sbjct 1247 AGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCAAAATCGAAAGATGCAGTATA 1188 Query 112 --GACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | ||||||||| |||| |||||||||||| |||||||||| Sbjct 1187 GNGCAGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 1145 >seq28529 Length=1253 Score = 82.4 bits (90), Expect = 7e-14 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGG 122 ||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| Sbjct 1199 GCGACTGTTTACTAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGG 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476662921937