Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq19326 288 2e-75 seq29598 116 9e-24 seq28529 82.4 2e-13 >seq19326 Length=6529 Score = 288 bits (318), Expect = 2e-75 Identities = 320/428 (75%), Gaps = 38/428 (9%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | |||||||||| | || | ||||||||| ||| ||| ||| ||||||| Sbjct 950 GCGGGTACTCGGCATCTTCACCGAGACTACAATTTCACAGAG-CTCATGGTTGAGACAGT 1008 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1068 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||| |||||||| |||| ||||||| || Sbjct 1069 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTG 1128 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC------ 232 |||||| || | |||||||||| |||||||||||| |||| ||||||||| Sbjct 1129 CTGCTAACGCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACTGCNCT 1188 Query 233 ---GTCCA-CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288 | || |||||| |||||||||| |||||||||| |||||||||||| ||||| Sbjct 1189 ATACTGCATCTTTCGATTTTGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTT 1248 Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348 | || || || ||| ||| | |||| ||||| Sbjct 1249 TTTACTGCGGCCACCAT-TGCTGA-----------------------TGGCGTCTCTTCT 1284 Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408 |||||||||||| | |||||||||||||||| || ||| ||| ||| |||| | Sbjct 1285 CCCGAAGTTACGAGACTATTTTGCCTAGTTCCTTAACCATGATTCACTCTAGCACCTTAG 1344 Query 409 TATTCTCT 416 ||||||| Sbjct 1345 GATTCTCT 1352 >seq29598 Length=7608 Score = 116 bits (128), Expect = 9e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| | |||||| ||| | || ||||||||| |||| | ||||||||| Sbjct 7492 CGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGT 7551 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 | | ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7552 GGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 7608 >seq28529 Length=1253 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 225 CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 |||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 1253 CCCTATACTTCCACTTACGTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260425832384