Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq19326 349 7e-94 seq29598 120 6e-25 seq28529 80.6 6e-13 >seq19326 Length=6529 Score = 349 bits (386), Expect = 7e-94 Identities = 303/371 (82%), Gaps = 15/371 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| |||||||||||||| || ||||||||||| ||| || |||||||||||||||| Sbjct 955 TACTCGGCATCTTCACCGAGACTACAATTTCACAGAGCTCATGGTTGAGACAGTGCCCAG 1014 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1015 ATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1074 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGCT-CTA 178 |||||||||||||||||||||||||||||||||| ||| | |||||| |||||| ||| Sbjct 1075 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTGCTGCTA 1134 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATAC------AT---- 228 || ||||||||||||||||||||||||| ||||| ||||||| || Sbjct 1135 ACGCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACTGCNCTATACTG 1194 Query 229 CGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCT 288 | |||| ||| || ||||| |||||||||||| ||||||||||| ||||||| || || Sbjct 1195 CATCTTTCGATTTTGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTTACT 1254 Query 289 GCGGCCTGTCATAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 |||||| ||| | ||| | |||||||| |||||||| | |||||||| ||| Sbjct 1255 GCGGCC-ACCATTGCTGATGGCGTCTCTTCTCCCGAAGTTACGAGACTATTTTGCCTAGT 1313 Query 347 TCCTTAACAAT 357 |||||||| || Sbjct 1314 TCCTTAACCAT 1324 >seq29598 Length=7608 Score = 120 bits (132), Expect = 6e-25 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||||| |||||| ||| |||| | ||||||| | || || | ||||||||| || Sbjct 7498 TACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGTGATGTTGGAGACAGTGGAGAA 7557 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 7558 ATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 7608 >seq28529 Length=1253 Score = 80.6 bits (88), Expect = 6e-13 Identities = 108/148 (73%), Gaps = 12/148 (8%) Strand=Plus/Minus Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 ||||||| || ||| || || ||||| ||||||||||| ||||||||||||| | Sbjct 1252 CCTATACTTCCACTTACGTGTTTGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCTACTCC 1193 Query 280 CTATTCTCTGCGGCCTGTC-ATAG-------AC---AGGCACCCCTTCTCCCTAAGTTAC 328 ||||| | ||| ||| | |||| || |||| |||||||||| ||||||| Sbjct 1192 CTATTTTGTGCCACCTACCAATAGTTGCCTAACAGTAGGCTACCCTTCTCCCGAAGTTAC 1133 Query 329 GGGGTCATTTTGCCGAGTTCCTT-AACA 355 || | ||||||||||||||| |||| Sbjct 1132 AGGTATAATTTGCCGAGTTCCTTCAACA 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062084711552