Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq17296 122 1e-25 seq4287 102 1e-19 >seq17296 Length=1142 Score = 122 bits (134), Expect = 1e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 640 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCAATCCACGAACTAAGAACGGCCATGC 699 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||| | | || |||| |||||||| |||| Sbjct 700 ACCACTACCCTCAAATTCGTGAAAACGCTATCAAATTGTC 739 Score = 87.8 bits (96), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||| | ||||||| |||||||||||||||||||||||| |||||||||||| ||| Sbjct 270 TCATTGTAACTCGCGTGCCGCCCAGAACATCTAAGGGCATCACGGACCTGTTATTG-CTC 328 Query 76 AAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || || ||| | |||| |||| | | ||| | |||| || Sbjct 329 AA--TTTCATATTGCTGAAAGCAATTTGTCTATTTAAGCAG 367 >seq4287 Length=1260 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 790 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 732 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 731 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796570923237