Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq29598 78.8 2e-12 seq19326 78.8 2e-12 >seq29598 Length=7608 Score = 78.8 bits (86), Expect = 2e-12 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT-TCCCTATTAGTGGGTGAAC 103 |||| | |||||||| |||| |||||||||| ||||||| || || ||| | || |||| Sbjct 6929 AAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTATCACT-TTAATCGGCGAAC 6987 Query 104 AATCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 | | ||| ||| ||| ||| || | | ||| || ||| ||||||||| | Sbjct 6988 AGCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGT---GATGAGTCGACATCGAGGTG 7044 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 |||| | |||||||||||||||| | ||| |||| |||||||| | ||| | Sbjct 7045 CCAAACGGTGTCGTCGCTATGAACGCTCGAACACCATTAGCCTGTTATCCCCGGCGTACC 7104 Query 221 TTTT 224 |||| Sbjct 7105 TTTT 7108 >seq19326 Length=6529 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 405 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 464 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | | || | Sbjct 465 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCGAACCTC 521 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| | ||||| | || |||| |||||||| | ||| ||||| Sbjct 522 CCCGTCGATATGAGCTCTTGGGGGAGACTAGCCTGTTATCCCCGGAGTACCTTTT 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854146439712