Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq19326 188 1e-45 seq29598 158 2e-36 >seq19326 Length=6529 Score = 188 bits (208), Expect = 1e-45 Identities = 170/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| Sbjct 771 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCT 712 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| | ||| |||| |||| | |||| || |||| ||||||| ||||||| || ||| Sbjct 711 CAGCACGCTTGGTAACCGTGCGTAGAGTGTAATGGCATAAGGGTGCTTGACTGTGAGACC 652 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| |||||| || | || |||||||| ||| | | |||||| ||| Sbjct 651 TACAAGTCGATCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTTCCGTATGGAAGGGC 592 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||| ||| | ||||||| Sbjct 591 CATCGCTCATAGGATAAAAGGTACTCCGGGGATA 558 >seq29598 Length=7608 Score = 158 bits (174), Expect = 2e-36 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 7317 GGACATTGTATGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGCGTAACGGAGGCG 7258 Query 172 CCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||| || || |||| || ||||| || | ||| ||| |||| ||| || Sbjct 7257 TACGAAGGTAAGCTAGAGCT-GGTCGGAAATCAGCTTAATAGTACAATGGCATAAGCTTG 7199 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||||| | |||| | ||||| |||||||||||| | || |||||||| | | Sbjct 7198 CCTGACTGCGAGGCTGACAAGCCAAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGAT 7139 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| || | |||||| ||||||||||| ||| | ||||||| Sbjct 7138 TCTGTATGGAAGGGTCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 7090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982108453152