Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq28529 260 5e-67 seq19326 188 3e-45 seq29512 129 2e-27 seq11587 82.4 3e-13 >seq28529 Length=1253 Score = 260 bits (288), Expect = 5e-67 Identities = 341/465 (73%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 48 TTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCA 106 || |||| ||||||||||||||| | || |||| | | || |||||||| | ||||| Sbjct 458 TTACCGGTATTCGGAGTTTGGTTAAATTTGGTAGGATGATGAATCCCCCTAGTCTATCCA 399 Query 107 GTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 |||||||||| |||| || | | | ||||| |||||||| |||||| |||||||| Sbjct 398 GTGCTCTACCCCCGGTAATATTCGTACAACGCTCTACCTAAATAGATTTCGCGGAGAACC 339 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 |||||| | ||||||||||||||||||||||||| |||| |||||| | || | Sbjct 338 AGCTATTTCCAAGTTTGATTGGCCTTTCACCCCTAATCACAACTCATCCAATACTATTGC 279 Query 227 AAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 ||| ||| | |||||| ||||||| |||||| |||||| ||| |||| | Sbjct 278 AACAGTAACT-GGTTCGATCCTCCAGTGTATCTTACTACACCTTCAATCTGGTCATGACT 220 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||||| | ||||||||| | | ||| | |||||||||| |||| |||||| Sbjct 219 AGATCACTTGGTTTCGGGTCTAATCCATAAAACTAAAACGCCCTATTAAGACTTGCTTTC 160 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 |||| | |||| || |||| |||| || || || | ||||||| | | |||| | Sbjct 159 GCTATGCCTACACCTAACGGCTTAAGCTTGCTCCA-TAGATTAACTCGCTGACCCATTAT 101 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| |||| |||||| || |||| | |||||| || | ||||| || Sbjct 100 GCAAAAGGTACGCTGTCACCCTATA-TTAAA----TATAGAGCTCCAACTGTTTGTAAGC 46 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 || || ||||||| |||||||||||||| || ||||| |||||| Sbjct 45 ACTTGATTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTC 1 >seq19326 Length=6529 Score = 188 bits (208), Expect = 3e-45 Identities = 198/258 (77%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||||| | | |||| | || ||||| ||| |||| |||| Sbjct 2286 GCATTCGGAGTTTGTCAGGAATTGGTAGGATTTGACTCCCCCGCATCCAATCAGTAGCTC 2345 Query 113 TACCTCCGGGAAGAAAC----ACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| || |||| || |||||||||||||||||||||||||||||| || || Sbjct 2346 TACCTCT---AATAAACTTATACACGACGCTGCACCTAAATGCATTTCGGGGAGTACGAG 2402 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | |||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct 2403 CTATCTCCCAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCGAAGACTTTTCAA 2462 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | ||||||||||||||| || ||||| |||||||||||||||||| |||| Sbjct 2463 CGTCAACCGGTTCGGTCCTCCACTTTGTGTTACCAAAGCTTCAACCTGCCCATGGGTAGA 2522 Query 289 TCACTTCGCTTCGGGTCT 306 |||| | |||| |||| Sbjct 2523 TCACAAGGTTTCGCGTCT 2540 Score = 123 bits (136), Expect = 9e-26 Identities = 154/208 (74%), Gaps = 16/208 (8%) Strand=Plus/Plus Query 395 AGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGAC 454 ||||||||| | ||||||||||||||||||| || | || |||||||| Sbjct 2786 AGGCTCATTATGCAAAAGGCACGCCGTCACCCA--ACTTGT--GG-------GCTCCGAC 2834 Query 455 GGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA---GGGGTACTTTTCA 511 | |||||||| | |||||||||| ||||||||| || | | | || ||||||| Sbjct 2835 CGCTTGTAGGCGTACGGTTTCAGGTTCTATTTCAC--CCTTCTATTCGAAGTGCTTTTCA 2892 Query 512 CCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGT 571 ||||||| |||| |||||||| | ||||||||| |||||||||||| ||| || | Sbjct 2893 CCTTTCCTTCACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGCCTTGGAGGAT 2952 Query 572 GGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| ||| ||||| || |||||| Sbjct 2953 GGTCCCCCCATATTCAGACAGGATTTCA 2980 >seq29512 Length=4374 Score = 129 bits (142), Expect = 2e-27 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 |||||||||||||| || ||||| |||||||||||||||||||||||||||| | ||||| Sbjct 2 CTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATC 61 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| || ||||||||||||||| || ||||||| | | ||||| || |||||| Sbjct 62 GGTCGTTAATGAGTATTTAGGCTTAGAGGATGGTCCCCCTATATTCAAACAGGATTTCA 120 >seq11587 Length=1097 Score = 82.4 bits (90), Expect = 3e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||| ||||||||| |||| | | || ||||||| |||||||||||||||||| Sbjct 477 GTTTCACGTACTATTTGACTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTT 418 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 || ||||||||||| | | | ||||||| |||| Sbjct 417 GTTCGCTATCGGTCTCATGGTAATATTTAGCCTTA 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817060590848