Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq19326 223 9e-56 seq28529 168 2e-39 seq29512 161 2e-37 seq11587 78.8 2e-12 >seq19326 Length=6529 Score = 223 bits (246), Expect = 9e-56 Identities = 175/208 (84%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271 |||||| ||||||| |||| |||||||||| ||||||||| || ||||||| || ||| Sbjct 2791 CATTATGCAAAAGGCACGCCGTCACCCAACTT-GTGGGCTCCGACCGCTTGTAGGCGTAC 2849 Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||||| |||||||||| | || | || || |||||| ||||||| |||| |||| Sbjct 2850 GGTTTCAGGTTCTATTTCACCCTTCTATTCGAAGTGCTTTTCACCTTTCCTTCACAGTAC 2909 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391 | |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 2910 TTGTTCACTATCGGTCTTTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 2969 Query 392 ACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| |||| |||| ||| ||||||| Sbjct 2970 ACAGGATTTCACGTGTCCCGCCCTACTC 2997 Score = 80.6 bits (88), Expect = 7e-13 Identities = 89/111 (80%), Gaps = 6/111 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 2437 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 2493 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTA 119 ||| || | |||||||||||||| || |||||| | || ||||| ||||| Sbjct 2494 ACCAAAGC-TTCAACCTGCCCAT-GGGTAGATCACAAGG-TTTCGCGTCTA 2541 >seq28529 Length=1253 Score = 168 bits (186), Expect = 2e-39 Identities = 224/295 (76%), Gaps = 17/295 (6%) Strand=Plus/Minus Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAG-TTACCCAACCTTTCAACCT 85 ||| || |||| ||| |||||| ||||||||| ||| |||| ||||| ||| || Sbjct 286 ACTATTGCAACAGTAACTGGTTCGATCCTCCAGT--GTATCTTACTACACCTT-CAATCT 230 Query 86 GCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGT 144 | ||| | |||||| | ||||| |||||||| | | | |||| | ||||||| | Sbjct 229 GGTCAT-GACTAGATCACTTGGTTT-CGGGTCTAATCCATAAA-ACTAAAACGCCCTATT 173 Query 145 AAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGT 203 |||||| ||||| ||||| |||| | |||| | |||||||| || | | | ||| | Sbjct 172 AAGACTTGCTTT-CGCTATGCCTACACCTAACGGCTTAAGCTT-GCTCCATAGATTAACT 115 Query 204 CGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA--AAGT---GGGCTCCCACTG 258 |||||||||||||| |||||||||||| ||||||| | | || | | ||||| |||| Sbjct 114 CGCTGACCCATTATGCAAAAGGTACGCTGTCACCCTATATTAAATATAGAGCTCCAACTG 55 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 ||||| ||| | ||||||||||||||||||||||||| |||||||||||||| Sbjct 54 TTTGTAAGCACTTGATTTCAGGATCTATTTCACTCCCCTC-CCGGGGTTCTTTTC 1 >seq29512 Length=4374 Score = 161 bits (178), Expect = 2e-37 Identities = 120/139 (86%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| Sbjct 1 TCTATTTCACTCCCCTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTA 59 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTC 401 |||||| | | ||||||||| ||| |||||||||||||| ||||||| ||| |||| Sbjct 60 TCGGTCGTTAATGAGTATTTAGGCTTAGAGGATGGTCCCCCTATATTCAAACAGGATTTC 119 Query 402 TCGTGCTCCGTCCTACTCG 420 |||| ||| |||||||| Sbjct 120 ACGTGTCCCGCCCTACTCG 138 >seq11587 Length=1097 Score = 78.8 bits (86), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 || |||||| | |||||| |||| | | | | | || |||||| |||||||||||||| Sbjct 480 ACAGTTTCACGTACTATTTGACTCTC-TATTCAGAGTGCTTTTCAACTTTCCCTCACGGT 422 Query 330 ACTAGTTCACTATCGGTCAGTCA--GTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| ||| ||| ||||||||||| || Sbjct 421 ACTTGTTCGCTATCGGTC--TCATGGTAATATTTAGCCTTAGA 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241231530368