Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq28529 154 3e-35 seq19326 80.6 6e-13 >seq28529 Length=1253 Score = 154 bits (170), Expect = 3e-35 Identities = 288/421 (68%), Gaps = 24/421 (6%) Strand=Plus/Minus Query 1 CGACTACGCCTGT-CGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGAC 59 ||||||| ||| | ||| ||||||||||| |||||| |||| ||||| ||||| || Sbjct 921 CGACTACTCCTTTACGGACTCGCCTTAGGTACCGACTAACCCTACGCAGATTAACTTAAC 862 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 |||| |||| ||| | || | | | || ||| | | |||||||||||| | Sbjct 861 GTAGGAAACCTTAGATTTTTGGTGAGAGTGTTTTTCACACTCTTTTACGCTACTCATGTC 802 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||| ||||| | | ||||| || | |||| || |||||| ||| || Sbjct 801 AGCATTTTCACTTCCGATATCTCCAGCAGTCT-TCACAGACCACCTTCACAGACTTACGG 743 Query 178 GACGCTCCCCTACCCAACCACACAGGTTG---------------CCACAGCTTCGGCGGA 222 ||||||| ||||| | || | | | ||||| |||||| | Sbjct 742 AACGCTCCGCTACCGCGCTTCATCGATCGAAATCAATAAAGCACCCACATCTTCGGTATA 683 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTA 277 | ||| ||||||| |||||| ||||||| ||| |||| ||| |||||||| ||| Sbjct 682 CAGCTTTAGCCCCGGTACATTTTCGGCGCAGAAAAACTTATTTAGACAAGTGAGCTGTTA 623 Query 278 CGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCAC 337 ||| ||||| ||||||||||||||||||||||||||||| | ||| | || || Sbjct 622 CGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCAACCTCCTAGCTGTAATGGTTTTTCTAC 563 Query 338 ATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTC 397 ||||| |||||| || | || ||| |||||| | || ||||||||||||||||| Sbjct 562 TTCCTTCCCCACTTAGCTGTAATTTTGGGACCTTAGATAGTGGTCTGGGCTGTTTCCCTC 503 Query 398 T 398 | Sbjct 502 T 502 >seq19326 Length=6529 Score = 80.6 bits (88), Expect = 6e-13 Identities = 224/339 (66%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 3 ACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCT 62 ||||| ||| |||| |||| ||||| ||||||| |||| || || | | || | Sbjct 1684 ACTACCCCTTTCGGGTTCGCGTTAGGTCCCGACTAACCCTCAGCTGATTAGCATGGCTGA 1743 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 |||| |||| | |||| | |||| ||| | |||| | || |||| |||||| | Sbjct 1744 GGAAACCTTAGTCTTTCGGTGAGCGGGTTTCTCGCCCGCTTTATCGTTACTTATGCCTAC 1803 Query 122 ATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACG 181 ||| || | || |||||||| | |||| ||||||| | ||| | | Sbjct 1804 ATTTTCTTTTCTGTCCGCTCCACCAAGCC-TCACGACTCAGCTTCTGTGCAAACAGAATG 1862 Query 182 CTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 |||||||||| || | | | | ||| |||||||| | ||| || Sbjct 1863 CTCCCCTACCAGATATATCTAATGATATAAAT--CCATAGCTTCGGTACTCTATTTATGC 1920 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 || || ||||| || | | | || ||| |||||||| ||||||||||||| || | Sbjct 1921 CCGATTA--TTATCCATGCCGGACCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATG 1978 Query 293 A-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCA 330 | ||||||||||||||||||| |||| | |||| | ||| Sbjct 1979 AATGGCTGCTTCCAAGCCAACATCCTAGCTGTCAATGCA 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177250523648