Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq19326 165 1e-38 >seq19326 Length=6529 Score = 165 bits (182), Expect = 1e-38 Identities = 182/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTC 102 |||||||| | |||||||| | ||| |||||| ||||||||||||||||| |||| Sbjct 5029 GCCTTCGCAATTGGTGTTC-TAAGTAATATCTATGCATTTCACCGCTACACTACTTATTC 5087 Query 103 CGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCA 162 | | ||| | |||||||| |||| |||| |||| | ||| ||| Sbjct 5088 CAGCCACTTCTACTTTACTCAAGACCTGCAGTATCAATGGCAGTTTCATAGTTAAGCTAT 5147 Query 163 TAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 || |||||| ||||||| | |||||||| ||||||| |||||||||||||||| Sbjct 5148 GAGATTTCACCACTGACTTACAGATCCGCCTACGGACCCTTTAAACCCAATAAATCCGGA 5207 Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 5208 TAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 5267 Score = 107 bits (118), Expect = 3e-21 Identities = 113/147 (77%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT--CCAGCAATCCGCCTTCGCCACTGGT 58 |||||||||||||| ||||||||||| ||| |||| | |||||||||||||||| Sbjct 4829 CCCACGCTTTCGCGTCTCAGCGTCAG--ACTTAAACCAGATAGACGCCTTCGCCACTGGT 4886 Query 59 GTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC 118 |||||||| |||| |||| |||||||| |||||| |||||||| | ||||| Sbjct 4887 GTTCCTCCTAATATTTACGAATTTCACCTCTACACTAGGAATTCCTCTATCCTCTTTTAA 4946 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAG 145 ||| ||| | |||||| ||| |||| Sbjct 4947 TCTCTAGATTAGCAGTTTTAAAAGCAG 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828561723367