Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq19326 288 2e-75 seq29598 279 8e-73 >seq19326 Length=6529 Score = 288 bits (318), Expect = 2e-75 Identities = 228/274 (83%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | ||| Sbjct 234 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 293 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| | |||| | ||||||| | |||||||||||||| || |||||||||||||| Sbjct 294 CGGTGCTCCTGGCGGAACAACTGATACACCAGAGGTTTGTTCAAATCGGTCCTCTCGTAC 353 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || ||||||||| || |||||| | | ||||| |||||||||||||| | Sbjct 354 TAGATTCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 413 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 414 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 473 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 474 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 507 >seq29598 Length=7608 Score = 279 bits (308), Expect = 8e-73 Identities = 226/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 || ||||| ||| ||||| |||| |||||| ||||||| || | |||||||| ||||| Sbjct 6766 GAAGAGGGTTTCTTGCTTATATGCTTTCAGCAATTATCCCATCTATACTTAGCTACCCAG 6825 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| |||||||| |||||||||| | |||||| |||||||||||||| Sbjct 6826 CGATGCTATTGGCATAACAACTGGCACACCAGAGGTATATCCATCTCGGTCCTCTCGTAC 6885 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| | ||||||||||||| |||||| | ||||| ||||||||||||| | Sbjct 6886 TAGAGTTAGCACTTCTCAAATTTCCTTTACCCACGGCAGATAGAAACCGAACTGTCTCAC 6945 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| ||| | ||||||| ||||||||||| ||||||||||||| Sbjct 6946 GACGTTCTAAACCCAACTCACGTATCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 7005 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||||||||||||||| || ||| |||||||| Sbjct 7006 TTCTTCAGCCCCAGGATGTGATGAGTCGACATCG 7039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780575523172