Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq19326 131 5e-28 >seq19326 Length=6529 Score = 131 bits (144), Expect = 5e-28 Identities = 186/253 (74%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 11 TCTTCGGA---GA-AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACA 66 |||||||| || ||||||||| ||||||| | ||| |||| | |||||||| | || Sbjct 5817 TCTTCGGAATAGAGAGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCA 5758 Query 67 CACGGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATG-GTA 125 ||||| | | ||||||| | |||||| |||||||| || | |||| || Sbjct 5757 GGGGGATAGCCTTTCGAAAGGAAGATTAATACCCCATAATATA-TTGACTGGCATCAGTC 5699 Query 126 GAAGTATCAAAGCTCCGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAG 184 || | | ||| |||||| || | || ||| | | |||| |||||| ||||||||| | Sbjct 5698 GATAT-TGAAAACTCCGGTGG-ATAGAGATGGGCACGCGCAAGATTAGATAGTTGGTAGG 5641 Query 185 GTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGG 244 |||||||| ||||||| | |||| ||| | ||||||||||||||| ||||| ||| Sbjct 5640 GTAACGGCCTACCAAGTCAGTGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGG 5581 Query 245 AACTGAGACACGG 257 |||||||||||| Sbjct 5580 TACTGAGACACGG 5568 Score = 116 bits (128), Expect = 1e-23 Identities = 99/121 (82%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||| |||||| | || |||| |||||||||| |||||||||||||||||||||||| | Sbjct 5281 TGAAGGTACTATACGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 5222 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| || ||||||||||||| ||| | ||| |||||||| |||||| || | ||||| Sbjct 5221 GGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGT 5163 Query 500 C 500 | Sbjct 5162 C 5162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497155557248