Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq19326 221 3e-55 >seq19326 Length=6529 Score = 221 bits (244), Expect = 3e-55 Identities = 182/220 (83%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 |||||| | | ||| ||| || ||||||||| ||||||| |||||| | | Sbjct 5000 GTGAAATCCCAGAGCTTAACTTTGGAACTGCTTTTAAAACTGCTAATCTAGAGATTAAAA 4941 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 | || || |||||||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct 4940 GAGGATAGAGGAATTCCTAGTGTAGAGGTGAAATTCGTAAATATTAGGAGGAACACCAGT 4881 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||||| || |||| | ||| ||||| ||||| | |||||||||||||||||| Sbjct 4880 GGCGAAGGCGTCTATCTGG--TTTAAGTCTGACGCTGAGACGCGAAAGCGTGGGGAGCAA 4823 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 |||||||||||||||||||||||||||||||||||||||| Sbjct 4822 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 4783 Score = 196 bits (216), Expect = 1e-47 Identities = 187/238 (79%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 5263 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 5204 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| |||||| || | |||||||| ||||||| || | Sbjct 5203 GATTTATTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGTCAGTGGTGAAATCTCATAG 5144 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT---GCAGGAGGGGCAAGTGG 189 || ||| | ||||| |||| |||||||| || |||| | || || ||| ||| Sbjct 5143 CTTAACTATGAAACTGCCATTGATACTGCAGGTCTTGAGTAAAGTAGAAGTGGC---TGG 5087 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 ||| ||||||||||||||||||| ||||||||| |||||||| | |||||||| Sbjct 5086 AATAAGTAGTGTAGCGGTGAAATGCATAGATATTACTTAGAACACCAATTGCGAAGGC 5029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202842926336