Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq4287 127 4e-27
seq17296 105 1e-20
>seq4287
Length=1260
Score = 127 bits (140), Expect = 4e-27
Identities = 154/206 (75%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 727 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 785
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 786 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 843
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 844 CTTTCATGCTTGGGATTGTGGACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 902
Query 286 CGCGTGTCATCAGCACGCGTTGATTA 311
| | ||||| | | ||| |||| ||
Sbjct 903 TGTGAGTCATTAACTCGCATTGACTA 928
>seq17296
Length=1142
Score = 105 bits (116), Expect = 1e-20
Identities = 158/220 (72%), Gaps = 7/220 (3%)
Strand=Plus/Minus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||||||| |||||||||||||||||||||||| ||||||| | |||| |
Sbjct 330 TTGAG-CAATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCGGCACGCGAGTTACAAT 272
Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228
|| | ||||| ||| ||||| ||| ||| |||| |||| ||| |
Sbjct 271 GAAGCTGACAACGTGTT----ACCTTATCCGAGAGGATTGGGAAATC-ACTTAGCCAGCT 217
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
|| | | ||||| | | | || || | | | | | ||| ||||| ||||||||| |
Sbjct 216 TCCTAGTTGGGATTGTGGACTG-AAAAAGTTCACATGAACCAGGAACTCCTAGTAAGTGT 158
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| |||| ||| || ||||||||| ||||| |||||||
Sbjct 157 GAGTCACTAGCTTGCATTGATTACGACCCTGATCTTTGTA 118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946918899456
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |