Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq28529 253 7e-65 seq19326 223 1e-55 >seq28529 Length=1253 Score = 253 bits (280), Expect = 7e-65 Identities = 334/453 (74%), Gaps = 20/453 (4%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||||||||||||||||||||| |||| |||| |||||||| |||| | | |||| Sbjct 198 TAGACCCGAAACCAAGTGATCTAGTCATGACCAGATTGAAGGTGTAGTAAGATACACTGG 257 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||| || ||||| || | || ||||||| |||| |||||||||||||| Sbjct 258 AGGATCGAACCAGTTACTGTTGCAATAGTATTGGATGAGTTGTGATTAGGGGTGAAAGGC 317 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT----CAA 208 || |||||||||||||||||||||||| ||||| |||||||||||| || | | | Sbjct 318 CAATCAAACTTGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTTGTACGA 377 Query 209 GTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGG--TCATTGCGACTTACCAAA 266 ||| || |||||||||||||||| | |||||||| |||| | | ||||||| Sbjct 378 ATATTAC---CGGGGGTAGAGCACTGGATAGACTAGGGGGATTCAT--CATCCTACCAAA 432 Query 267 CCATTGCAAACTCCGAATGCGCATCAGT--TTTACCGCGGGAGTGAGGGCATGGGTGCTA 324 |||||||||||| | | | | | ||| || || | || |||||||| Sbjct 433 TTTAACCAAACTCCGAATACCGGTAATTAATATACAGC-AGACACACTGC--GGGTGCTA 489 Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384 | ||||||| ||||| || | || ||| | | |||||| ||| |||| |||||| Sbjct 490 A-GTCCGTGGTGAAGAGGGAAACAGCCCAGACCACTATCTAAGGTCCCAAAATTACAGCT 548 Query 385 AAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444 |||| || ||||| | | | |||||||||| ||||||||||||||||||| Sbjct 549 AAGT--GGGGAAGGAAGTAGAAAAACCATTACAGCTAGGAGGTTGGCTTGGAAGCAGCCA 606 Query 445 TTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||||||| ||||||||||||||| ||| Sbjct 607 -TCCTTTAAAGAAAGCGTAACAGCTCACTTGTC 638 >seq19326 Length=6529 Score = 223 bits (246), Expect = 1e-55 Identities = 261/348 (75%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||| ||||||| ||||||||||||||| |||| ||||| | |||||||| ||| Sbjct 2541 TAGACGCGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTTTGGTAACACAAAGTGG 2482 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| ||||||| | | |||||||| | |||||| ||||||||||||||||||||| Sbjct 2481 AGGACCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGC 2422 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT 212 || |||||| ||| |||||| || ||| |||||| |||||||| || || |||| Sbjct 2421 CAATCAAACTGGGAGATAGCTCGTACTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTAT 2362 Query 213 CA--CCATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCA 269 | || | |||||||| |||| | ||| | |||| | | |||||| | Sbjct 2361 AAGTTTATTAGAGGTAGAGCTACTGAT-TGGATGCGGGGGAGTCAAATCCTACCAATTCC 2303 Query 270 TTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 | |||||||||||||| || | | || || ||| ||||||||| ||||||||||||| Sbjct 2302 TGACAAACTCCGAATGCTAATAAATGTT-CCACGGCAGTGAGGGCGCGGGTGCTAAGGTC 2244 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAAT 377 |||| |||||||| ||||| || ||| | ||||||||| ||| |||| Sbjct 2243 CGTGTCCGAGAGGGAAAGAACCCAGACCAACAGCTAAGGTCCCCAAAT 2196 Score = 165 bits (182), Expect = 3e-38 Identities = 132/154 (86%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2011 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 1952 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG-- 531 ||||||| ||| ||| ||||||||||||||| | ||| | | ||||||||| ||| Sbjct 1951 AGTCGAGCGGTCCGGCATGGATAATAATCGGGCA-TAAATAGAGTACCGAAGCTATGGAT 1893 Query 532 ---GATCATT-TATATGATC-GGTAGGGGAGCAT 560 |||||| |||| ||| ||||||||||||| Sbjct 1892 TTATATCATTAGATAT-ATCTGGTAGGGGAGCAT 1860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689098577408