Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq29512 183 6e-44 seq19326 170 4e-40 >seq29512 Length=4374 Score = 183 bits (202), Expect = 6e-44 Identities = 240/324 (74%), Gaps = 14/324 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||| || |||||||||||||| | | |||||||||||||||| | || ||||||| Sbjct 476 AGAGCACTTGATGGATGCCTTGGCGTTAATAGGCGATGAAGGACGTGGCAGGCTGCGATA 417 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||| | ||| || ||| ||||| |||||||||||||||||||||| | Sbjct 416 AGCTTCGGGGAATTGTCAA-CAAGTTTTAATCCGAAGATTTCCGAATGGGGAAACCCAAC 358 Query 121 CC-TTTGG---GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTG 176 ||| | || ||| | |||||| ||| ||| |||| ||| || |||||| Sbjct 357 TAGTTTAGCTAGTTATTATGTATTGAATAAATA--TAT--AAAGTAAACTTGGTGAACTG 302 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 ||| ||||||||||| ||||||||||||||| |||||||| ||||||| |||||| Sbjct 301 AAATATCTAAGTAGCCAAAGGAAAAGAAATCAAACGAGATTCTGTTAGTAGTGACGAGCG 242 Query 237 AAATGGGATGA-GCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGA 295 ||| ||| | ||| | || ||| ||| | | |||| || ||||||||| | Sbjct 241 AAAGCGGAAAAGGCCAGT--GATTTAG--AAATAAGAATTAGAATACTATGGAAATAGTA 186 Query 296 GCCATAGCGGGTGATAGCCCCGTA 319 |||||| |||||||| || ||| Sbjct 185 ACCATAGAAGGTGATAGTCCTGTA 162 >seq19326 Length=6529 Score = 170 bits (188), Expect = 4e-40 Identities = 229/312 (73%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||| ||| | | |||||| ||||||||| ||| ||||| ||||| | Sbjct 3322 ATGGCGGATGCCTAGGCTTTCAGAGGCGACGAAGGACGTGGTAAGCTGCGAAAAGCTCGG 3263 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| || ||| |||| ||||||| |||| ||||||||||| |||||||| ||| Sbjct 3262 GGGATTG-GCACACACGAATTGATCCCGAGATGTCCGAATGGGGCAACCCGGCATGTTG- 3205 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAG 187 | |||| | | | | | | | | ||| ||| ||| ||||||||||||||||| Sbjct 3204 ---AAGACATG-TCACTCC----GCAAGGAGAGCAAACCCGGAGAACTGAAACATCTAAG 3153 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 || | | ||||||||||||| | |||||||| ||||||||||||||||| |||| | Sbjct 3152 TACCCGGAGGAAAAGAAATCGA-AGAGATTCCGTAAGTAGTGGCGAGCGAACGCGGATTA 3094 Query 248 GCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGT 307 ||| | || | || || || | |||| |||||||| | |||| ||| |||| Sbjct 3093 GCC--CAAAAGCT-TTTATATGTTTAATAGAATGTTCTGGAAAGAACAGCCGTAGAGGGT 3037 Query 308 GATAGCCCCGTA 319 |||||||||||| Sbjct 3036 GATAGCCCCGTA 3025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918127446432