Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq19326 378 2e-102 seq29598 205 3e-50 >seq19326 Length=6529 Score = 378 bits (418), Expect = 2e-102 Identities = 427/566 (75%), Gaps = 31/566 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| ||||||||| ||||| ||| |||||||| | | | || || Sbjct 642 TCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACC 701 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||||||| ||||||| ||||||||||| ||| ||||| | ||| |||||| Sbjct 702 AAGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCCAG 760 Query 121 TTAAACTACCCACCAGGCACTGTCC--CCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 | ||||||||||||| ||| ||||| | || | | | | ||||| Sbjct 761 TCAAACTACCCACCACGCAGTGTCCTTCTAAAAGAAGTTAGGCTCCAAG----------- 809 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | || ||||||||||||| |||||||||| |||||||||| | || ||| | Sbjct 810 --TAAGTAAAGGGTGGTATTTCAACGTTGACTCCACAAACACTAGCGTGCCTGCTTCAAA 867 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 ||||||||||||||||||||| | || || | |||||| ||| |||||| ||||| Sbjct 868 GTCTCCCACCTATCCTACACATTACTTACTCAAAGTCAATACGAAGTTATAGTAAAGGTT 927 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | | |||||||||||||| ||| | | ||||||| || ||| ||||||||| Sbjct 928 CACAGGGTCTTTTCGTCCCATTGCGGGTACTCGGCATCTTCACCGAGACTACAATTTCAC 987 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | || |||||||||||| | || ||||||| ||||||||||||||||||||||| Sbjct 988 AGAGCTCATGGTTGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTA 1046 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1047 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 1106 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCT--CTTAACCTTCCAG 534 |||| | | ||| || || || |||| || | ||| ||||||||||||| Sbjct 1107 TTCAGTCAAACGCTTCGCA------TTG--CTGCTAAC--GCCCTTCCTTAACCTTCCAG 1156 Query 535 CACCGGGCAGGCGTCAGTCCGTATAC 560 ||||||||||| ||||| || ||||| Sbjct 1157 CACCGGGCAGGTGTCAGACCCTATAC 1182 >seq29598 Length=7608 Score = 205 bits (226), Expect = 3e-50 Identities = 306/432 (71%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 5 CTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACC 64 ||||| || |||||||||| || ||| ||| || ||| | |||||| || ||| Sbjct 7178 CTTGTCAGCCTCGCAGTCAGGCAAGCTTATGCCATTGTACTATTAAGCTGATTTCCGACC 7237 Query 65 AGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAA 124 || || ||||| | |||||||||||| ||| ||||| | ||||||||||| || Sbjct 7238 AGCTCTAGCTTACCTTCGTACGCCTCCGTTACGCTTTAGGAGG-CGACCGCCCCAGTCAA 7296 Query 125 ACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACG 184 ||||||||||| || ||||| ||||| ||| || ||||| |||| | | Sbjct 7297 ACTACCCACCATACAATGTCCTAGTTTCAGATAATGAAACATAGTTAGTTATCAAAAGCA 7356 Query 185 GTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 || ||||||| |||| ||||||| | |||||| | ||| ||||||| Sbjct 7357 TAAAGGGTGGTATCTCAAGGGTGACTCCATTATAGCTAGCGCCATAACTTCAAAGTCTCC 7416 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGG 303 |||||||||| |||| | | ||| |||| |||||||||| ||||| | |||| Sbjct 7417 CACCTATCCTGCACATCAGACTCTCAATAACAATGTAAAGCTATAGTAAAGGTGCACGGG 7476 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||| |||||| ||||| | | | |||||| || | | | ||||||| | | Sbjct 7477 GTCTCTTCGTCTAACCGCGGGTACCCCGCATCTGCACGGGGAATTCAATTTCGCTGAAGT 7536 Query 364 TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 || | ||||||| | | | |||||||||||||||||| ||||||||||||||||||| Sbjct 7537 GATGTTGGAGACAGTGGAGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACA 7596 Query 424 AGGAATTTCGCT 435 |||||||||||| Sbjct 7597 AGGAATTTCGCT 7608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701894778752