Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq15550 82.4 2e-11 >seq15550 Length=6095 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 37708 AGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACA 37767 ||| || || || || || ||||| || | |||||| |||| | ||||| ||||| || Sbjct 2857 AGATCGTACTGGGGTGGGAACGCTCTCTATCTTCGGCTACCAGATGCGCTTTAACTTGCA 2798 Query 37768 AGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACT 37827 ||| || ||||| | || || || ||| | ||| | || || || ||||||||||| Sbjct 2797 AGAGGGCTTTCCATTGGTCACCACCAAACGGTGCCATCTACGTTCAATTATTTATGAACT 2738 Query 37828 GCTTTGGTTTTTA 37840 ||| ||||||||| Sbjct 2737 GCTGTGGTTTTTA 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130593960586050