Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 338 5e-88
seq5596 239 4e-58
>seq9081
Length=2203
Score = 338 bits (374), Expect = 5e-88
Identities = 576/830 (69%), Gaps = 9/830 (1%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| ||||| ||||||||| || || || |||||||| || ||||| |||| |||||
Sbjct 873 AGGCTGAAGCAAGCTTCTGGACAGTCGAAGAAGTCGATTTATCAAAAGATATGAGTGACT 814
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
|||| ||| | |||| || || || ||| || || || |||||||| |
Sbjct 813 GGGAAAAATTAAAGGATTCAGAACGTCACTTTATCTCACACGTATTAGCATTCTTTGCTG 754
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || ||||| || || |||||||| ||| | ||||| ||| ||||| || |||||
Sbjct 753 CATCAGACGGCATTGTAAATGAGAACTTAATTGAACGATTCAGTCAGGAAGTTCAAGTAA 694
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| || || || | || || || ||||| ||||| ||||| ||||| ||||| |||||||
Sbjct 693 CAGAAGCTCGATTCTTTTATGGATTCCAAATTGCTATGGAAAATGTACACTCAGAGATGT 634
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|| |||| || || || || ||| | || | | ||||| || |||||||
Sbjct 633 ACTCGATTCTAATTGAAACTTATATCCGTGATGCAAAGCAGCGTGACTTCTTATTCAATG 574
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| || ||||| ||||| || ||| || || || |||||||| |||||||| |||
Sbjct 573 CTATTGAGACTTTACCGTGCGTAAAGAAAAAGGCAGACTGGGCCTTAAATTGGATATCCA 514
Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
||| || | |||||||||||| | | || ||||| | |||||||| | || |
Sbjct 513 GTAAGCATGCAAACTTTGGTGAACGAGTTATTGCCTTTGCTGCTGTCGAGGGGATTTTCT 454
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| |||||| ||||| |||||||||||| | ||||| |||||| | ||||| ||| |||
Sbjct 453 TTAGTGGAAGCTTTGCAGCAATCTTTTGGATTAAGAAGCGTGGATTAATGCCAGGTTTGA 394
Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645
| ||| ||||| | || || | ||||| || | ||| |||| ||||| ||
Sbjct 393 CATTCTCAAATGAACTTATTTCGAGAGACGAAGGACTTCATCGTGACTTTGCATGCTTAA 334
Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705
| | ||||| |||| | | || | | || || || | ||| ||| | |
Sbjct 333 TGTACAAAC---ATCTTATTCAGAAGCCACCAAAAGAACGAGTTGTTGAAATTATCACAG 277
Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765
|||| |||| || ||| |||||||| |||||||||| | || || | | ||||
Sbjct 276 AGGCTGTAAAGATTGAAAAGGAATTTTTGACTGACGCACTTCCAGTAAAGATGTTGGGCA 217
Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825
||||||||| ||||||| | || |||||||| || ||||| | | | || | ||| |
Sbjct 216 TGAATTGTGATTTAATGTCTGAATACATTGAATTCGTAGCCGATCATTTATTAGGCGAAT 157
Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATT-TGATTTCATGGACATGATTTCG 61884
|||| | | | |||||||||| ||||| ||||| | |||| ||||| | |||||
Sbjct 156 TGGGACTTGACAAGGTCTATAATACCAAAAATCCATTCTCATTT-ATGGAATTAATTTCA 98
Query 61885 CTGGATGGCAAGACGAATTTTTTCGA--GAAACGTGTAGGCGACTATCAA 61932
|| || |||||||| || || || || |||| || ||||| ||||||
Sbjct 97 CTTGAGGGCAAGACTAACTTCTTTGAACGAAA--GGTTGGCGAATATCAA 50
>seq5596
Length=16775
Score = 239 bits (264), Expect = 4e-58
Identities = 994/1557 (64%), Gaps = 36/1557 (2%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || || || || || ||||| ||||| || || || || | || ||||| || ||
Sbjct 11252 ATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGT 11311
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
|| || || ||| |||| ||||| || |||| ||||| ||||||| || ||
Sbjct 11312 TTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTC 11371
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| ||||| ||||| || || ||||| |||||||| || |||||||| || |||||
Sbjct 11372 CGCTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCAT 11431
Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
| ||| | | | | | ||||| ||||| || || || || | | | |||
Sbjct 11432 TTGAATT-TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCAT 11490
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
||||| || ||||| | || | ||| ||| | | ||||||| |||| |||
Sbjct 11491 CAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGT 11550
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||| ||||| || | | || | || | ||| |||| | ||||| |
Sbjct 11551 CATCATCCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAA 11610
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
|||| || || |||||||| ||| | || ||| |||||||| |||
Sbjct 11611 ACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCAT 11670
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
| || |||| ||| || || || |||||||||||||| || || | |||||||| || |
Sbjct 11671 TATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTAC 11730
Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATC 65613
| | || | | || || | ||| | ||||| | ||||| || ||| |
Sbjct 11731 GAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGT- 11789
Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGCCGGTGAAC 65669
||| ||| |||||||| | ||| | | || |||||||| | | |
Sbjct 11790 GTCTTT-TCC------CACATATCATATTGTAATATACCTTTTGATACTGGAC----ATC 11838
Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGG 65729
| | | || || ||| | | || | || |||||| | ||| | ||
Sbjct 11839 CTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTC 11898
Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789
|| ||||||| ||||| || || || |||| | | || ||||| |||||| |
Sbjct 11899 CATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATG 11958
Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849
|||| | ||||| | ||| | || || | ||||||| |||||| ||||| |||||||
Sbjct 11959 GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGAT 12018
Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909
| | || || || ||| | || || || || ||| |||| | || ||||| ||
Sbjct 12019 GTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTAT 12078
Query 65910 TCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968
| ||||| | ||| || | | || | | | ||||| | ||||||| | | ||||
Sbjct 12079 TTAAATTTCTTGTGACTATCTTTGTGACTTCCTT-CAATTTATGGAAATCATATTCTTTA 12137
Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028
|||| || || |||||| | | ||||| ||||| | || |||
Sbjct 12138 ---CGATTTGGCTTG---------ACAAACATATTTAAGGCAATTGATGCTAAATTACAG 12185
Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088
||||| | || || | | ||| | ||||||||| || || | ||| ||| ||
Sbjct 12186 ACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGG 12245
Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148
|| || || | |||||||||||| || ||||| ||||||||||| |||| ||| ||
Sbjct 12246 ATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAA 12305
Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208
|| || || ||||||||||| || ||||| || || ||| | | | ||||||| ||
Sbjct 12306 GGTGTTCCTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACT 12365
Query 66209 GTACGTACCGCCCTACCTT-TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267
||| | | |||| ||| ||| || | || || | ||| || || |||
Sbjct 12366 TGACGAATAAATCGTCCTTCTGC-TTCATATCGAATATATAGATTTTCAAATTCTTTACC 12424
Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327
| || | |||| |||||| | || |||||||| | ||||| ||| |
Sbjct 12425 ATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCACATTTCATTGTT 12484
Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387
||| ||||| ||||||| | ||||| ||||| | || || || | ||| | || ||
Sbjct 12485 TTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACG 12544
Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447
|| || | || |||||| || || || |||||||| | || |||||||
Sbjct 12545 AACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCA 12604
Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507
||||||| |||| || || | || |||||| |||||||| || || || ||
Sbjct 12605 AGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACG 12664
Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567
|| ||| ||| | || | |||||| |||||||| || || || | ||||| || ||
Sbjct 12665 TGCTGTATTATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACC 12724
Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624
| || | ||| || || ||| |||||||| | ||||| ||||| ||
Sbjct 12725 AGCTATATATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATTCCACCTGC 12781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397424204251280
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