Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq29581 118 3e-22
>seq29581
Length=6716
Score = 118 bits (130), Expect = 3e-22
Identities = 246/362 (68%), Gaps = 12/362 (3%)
Strand=Plus/Minus
Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577
||||| || || || |||| ||||||| ||| ||| | || | |||||||||
Sbjct 4006 AAATATCCGATAGTCTCTATAGAAGATGCAATGAGTGAAGATGATCATAATGGTTGGAAA 3947
Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637
| | || || | || || ||||||||||||| || || || || || || || ||
Sbjct 3946 CTTTTAACCAAAAGGCTAGGAAGTAAAGTTCAATTAGTGGGAGATGATTTATTTGTTACA 3887
Query 2638 AACACTGCTTACCTTGAAAA----AGGTATT--GCAGAACACGCTGCTAACTCAATCCTT 2691
|| || || || | || |||||| ||| || | | || || | | |||
Sbjct 3886 AAT--TG--TAAATTAATAAGTGAAGGTATAAAGCAAAAAATG--GCAAATGCTGTACTT 3833
Query 2692 ATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAA 2751
|| ||| ||||||||| || ||||| || ||||| ||| | ||||| ||||| | | |
Sbjct 3832 ATTAAACCTAACCAAATAGGAACTTTAACAGAAACATTTAATGCTATAAAAATGACCATA 3773
Query 2752 GAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811
| |||||| | || | | || ||||||||||| ||||| ||||| |||||||
Sbjct 3772 TCAAATGGATATAGGGCTATTATTTCTCACCGTTCAGGAGAAACGGAAGACACAACAATA 3713
Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871
| |||| || |||||| | || |||||| || ||||||||||| | ||||| ||
Sbjct 3712 TCACATATAGCGGTTGCATCAAATTGTGGTCAGATAAAGACAGGTTCGCTATCACGATCT 3653
Query 2872 GA 2873
||
Sbjct 3652 GA 3651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155983409824788
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |