Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq8700 134 2e-26 seq19326 96.9 5e-15 seq29583 84.2 3e-11 >seq8700 Length=5779 Score = 134 bits (148), Expect = 2e-26 Identities = 399/611 (65%), Gaps = 22/611 (4%) Strand=Plus/Minus Query 162481 TATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCT 162540 ||||| |||| ||| || || || | |||| || ||| | |||||| || || Sbjct 764 TATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACACCATTTTATCCAAGAAGTCCA 705 Query 162541 TATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGAC 162600 |||| |||||||||| | ||||| | ||||||||| | || ||| | ||| ||| | Sbjct 704 TATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATTAATTACCGTGAAGCCTACGGT 645 Query 162601 ATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTC 162660 || |||| | || |||||| |||| ||||| ||| || | ||||| |||| ||| Sbjct 644 ATGTATGCATGTAATGGTATTTTATTTAATCATGAATCGCCAAGAAGAGGTGAGAATTTC 585 Query 162661 GTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA-AAGTGATCT 162719 || ||||| || ||| | || | | | |||| | | || | ||| ||| Sbjct 584 GTGACACGAAAAATCACCAGATCAGTCGCTAAAATTTCATTA--AATCAACAAGAATTCT 527 Query 162720 AC-AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGG 162778 ||||||| || || || | |||||| ||||| || || || ||||||||||| | Sbjct 526 TGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCATGCTAAGGACTACGTAGAAG 467 Query 162779 CTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA-- 162836 |||||||| ||||| | ||||| || || ||||| || | ||| || || || || || Sbjct 466 CTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTTTGTAATTGCTACAGGAGAGA 407 Query 162837 ---GCAGTATTCTGTAAAGGACTTTGTTAATGCTGCAGCACCATACTTTGGGTTCAATAT 162893 ||||| ||| || ||||| | ||| || | | |||| | || Sbjct 406 CTCGCAGTGTTC-----GAGAGTTTGTCGAAGCTTCATTTAGACATATTGGAAAGGAAAT 352 Query 162894 TGAATGGAGAGGTGAAGGTCTTGATGAGTTTGGATTCTGTCTCAA----TACTGGTAGAA 162949 ||||||| | ||| || ||||||| |||| |||| || || | || Sbjct 351 TGAATGGCGTGGTAGTGGAGTTGATGAAGTTGG----TGTCGAAAAGGGAACAGATATCG 296 Query 162950 CAGTTGTAAAAGTCAATCCTAAATATTTCAGACCCGCAGAAGTAGAAACTCTTCTCGGTG 163009 | ||| ||||||||||| || ||||| || || ||||||| || || || |||| Sbjct 295 TACGTGTCAAAGTCAATCCAAAGTATTTTAGGCCAACAGAAGTTGATTTGCTGCTTGGTG 236 Query 163010 ATCCCACTAAAGCAAAGGAAGTTCTTGGATGGACTCCTACTTATACATTTAATGAACTAG 163069 | | || ||||| | | | ||||||||||| || | | | || |||||||| Sbjct 235 ACTCTACAAAAGCTAGAACATTGCTTGGATGGACACCAAAATGTGGTTTCGCTGAACTAG 176 Query 163070 TTGAAGAGATG 163080 | |||| ||| Sbjct 175 TCAAAGACATG 165 >seq19326 Length=6529 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||||||||| ||||| |||||| ||||| ||||||| Sbjct 3620 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 3561 Query 142852 TCCGTTATTCTCCAC 142866 ||| ||||||||||| Sbjct 3560 TCCCTTATTCTCCAC 3546 >seq29583 Length=6804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 ||||||||||||||||||||||| ||||||||||| | |||| |||||||| |||| | Sbjct 6712 TAGCTCAGTTGGTAGAGCGCCTGTTTTGCAAGCAGAAGGTCAGCGGTTCGACTCCGCTTG 6771 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 6772 CCTCCACCA 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691202694566520