Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_031927.1
Length=216121
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 134 2e-26
seq19326 96.9 5e-15
seq29583 84.2 3e-11
>seq8700
Length=5779
Score = 134 bits (148), Expect = 2e-26
Identities = 399/611 (65%), Gaps = 22/611 (4%)
Strand=Plus/Minus
Query 162481 TATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCT 162540
||||| |||| ||| || || || | |||| || ||| | |||||| || ||
Sbjct 764 TATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACACCATTTTATCCAAGAAGTCCA 705
Query 162541 TATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGAC 162600
|||| |||||||||| | ||||| | ||||||||| | || ||| | ||| ||| |
Sbjct 704 TATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATTAATTACCGTGAAGCCTACGGT 645
Query 162601 ATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTC 162660
|| |||| | || |||||| |||| ||||| ||| || | ||||| |||| |||
Sbjct 644 ATGTATGCATGTAATGGTATTTTATTTAATCATGAATCGCCAAGAAGAGGTGAGAATTTC 585
Query 162661 GTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA-AAGTGATCT 162719
|| ||||| || ||| | || | | | |||| | | || | ||| |||
Sbjct 584 GTGACACGAAAAATCACCAGATCAGTCGCTAAAATTTCATTA--AATCAACAAGAATTCT 527
Query 162720 AC-AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGG 162778
||||||| || || || | |||||| ||||| || || || ||||||||||| |
Sbjct 526 TGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCATGCTAAGGACTACGTAGAAG 467
Query 162779 CTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA-- 162836
|||||||| ||||| | ||||| || || ||||| || | ||| || || || || ||
Sbjct 466 CTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTTTGTAATTGCTACAGGAGAGA 407
Query 162837 ---GCAGTATTCTGTAAAGGACTTTGTTAATGCTGCAGCACCATACTTTGGGTTCAATAT 162893
||||| ||| || ||||| | ||| || | | |||| | ||
Sbjct 406 CTCGCAGTGTTC-----GAGAGTTTGTCGAAGCTTCATTTAGACATATTGGAAAGGAAAT 352
Query 162894 TGAATGGAGAGGTGAAGGTCTTGATGAGTTTGGATTCTGTCTCAA----TACTGGTAGAA 162949
||||||| | ||| || ||||||| |||| |||| || || | ||
Sbjct 351 TGAATGGCGTGGTAGTGGAGTTGATGAAGTTGG----TGTCGAAAAGGGAACAGATATCG 296
Query 162950 CAGTTGTAAAAGTCAATCCTAAATATTTCAGACCCGCAGAAGTAGAAACTCTTCTCGGTG 163009
| ||| ||||||||||| || ||||| || || ||||||| || || || ||||
Sbjct 295 TACGTGTCAAAGTCAATCCAAAGTATTTTAGGCCAACAGAAGTTGATTTGCTGCTTGGTG 236
Query 163010 ATCCCACTAAAGCAAAGGAAGTTCTTGGATGGACTCCTACTTATACATTTAATGAACTAG 163069
| | || ||||| | | | ||||||||||| || | | | || ||||||||
Sbjct 235 ACTCTACAAAAGCTAGAACATTGCTTGGATGGACACCAAAATGTGGTTTCGCTGAACTAG 176
Query 163070 TTGAAGAGATG 163080
| |||| |||
Sbjct 175 TCAAAGACATG 165
>seq19326
Length=6529
Score = 96.9 bits (106), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851
||||||||||||||| ||| |||||||||||| ||||| |||||| ||||| |||||||
Sbjct 3620 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGAC 3561
Query 142852 TCCGTTATTCTCCAC 142866
||| |||||||||||
Sbjct 3560 TCCCTTATTCTCCAC 3546
>seq29583
Length=6804
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859
||||||||||||||||||||||| ||||||||||| | |||| |||||||| |||| |
Sbjct 6712 TAGCTCAGTTGGTAGAGCGCCTGTTTTGCAAGCAGAAGGTCAGCGGTTCGACTCCGCTTG 6771
Query 142860 TCTCCACCA 142868
||||||||
Sbjct 6772 CCTCCACCA 6780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691202694566520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |