Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20tentans_20[genbank_20GCA_5F000786525.1_202014-11-07] 26,025 sequences; 213,462,749 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq119 286 3e-72 seq343 181 8e-41 >seq119 Length=197918 Score = 286 bits (316), Expect = 3e-72 Identities = 572/838 (68%), Gaps = 25/838 (3%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| ||||||||| || ||||| |||||||| || ||||| ||| | |||| Sbjct 167983 AGGCTGAAGCCAGCTTCTGGACAGTCGAGGAAGTCGATTTATCAAAAGATATGGAAGACT 167924 Query 61166 GGGAGCGTTTATCGAGCGGT--GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGC 61223 || | | | | || | || | ||||| || ||||| || || |||||||| Sbjct 167923 GGAACAATCT--CAAGGATTCAGAGCGTCATTTTATCTCGCATGTATTAGCTTTCTTTGC 167866 Query 61224 CGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 || || || || ||||| |||||||||||| | || |||||| ||||| || ||||| Sbjct 167865 TGCATCTGATGGCATCGTAAATGAGAATTTAATTGAGCGTTTCAGTCAGGAAGTTCAAGT 167806 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGAT 61343 | || || || | ||||| || ||||| ||||| ||||| ||||| ||||||||||| Sbjct 167805 TCCAGAAGCTCGATTCTTCTATGGATTCCAAATTGCTATGGAAAATGTACACTCGGAGAT 167746 Query 61344 GTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAA 61403 |||| | | || || || || || || || | | ||||| || ||||| Sbjct 167745 GTACTCAATATTAATTGAAACTTATATTAGAGATGCAAAGCAGCGTGACTTCTTATTCAA 167686 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC 61463 ||| || ||||| | || || ||| ||| || || ||||| || |||||||| | Sbjct 167685 TGCAATTGAGACACTTCCATGTGTTAAGAAGAAGGCTGACTGGGCTTTAAATTGGATATC 167626 Query 61464 CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 ||| | | || | |||||||||||| | | || ||||| | ||||| || | || Sbjct 167625 CAGCAAGAATGCAAACTTTGGTGAACGAGTTATTGCTTTTGCAGCTGTCGAAGGGATTTT 167566 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 || ||||| ||||| || || |||||| | ||||| | ||| | ||||| || | Sbjct 167565 CTTTAGTGGTAGCTTTGCAGCTATATTTTGGATTAAGAAGAGAGGATTAATGCCAGGGTT 167506 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643 ||| || ||||| | || || | ||||| || | ||| |||| ||||| || Sbjct 167505 GACATTTTCAAATGAACTTATTTCGAGAGACGAAGGACTTCATCGTGACTTTGCATGCTT 167446 Query 61644 GCTATTCAAACGCTATCTGGTGAATCG--TCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 | | ||||| |||| |||| | || | |||| | || | ||| ||| | Sbjct 167445 AATGTACAAAC---ATCT--TGAACAGAAGCCACCAAAGGAAAGAGTAGTTGAAATTATC 167391 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 ||||| |||| || || |||||||| | |||||||| | || || | | Sbjct 167390 ACAGAGGCTGTAAAAATTGAGAAGGAATTTTTAACTGACGCACTTCCAGTTAAGATGTTG 167331 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 ||||||||||||| ||||| | ||||| || ||||||||||| || | | | |||| Sbjct 167330 GGCATGAATTGTGATTTAATGACTCAGTACATAGAATTTGTTGCTGATCATTTATTGGGT 167271 Query 61822 GATTTGGG----TATGAAGCGGATCTATAATACGAAAAACCCATT-TGATTTCATGGACA 61876 || ||||| || ||| |||||||||| ||||| ||||| | |||| ||||| Sbjct 167270 GAATTGGGACTTGATAAAG----TCTATAATACCAAAAATCCATTCTCATTT-ATGGAAT 167216 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGA--GAAACGTGTAGGCGACTATCAA 61932 | ||||| || || |||||||| || || ||||| |||| || || || |||||| Sbjct 167215 TTATTTCACTTGAGGGCAAGACAAACTTCTTCGAACGAAA--GGTTGGTGAATATCAA 167160 >seq343 Length=103200 Score = 181 bits (200), Expect = 8e-41 Identities = 986/1558 (63%), Gaps = 40/1558 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCC-TAAGATAGTACATGCCGGT 65136 || || || ||||| || ||||| ||||| | || || | |||| || ||||| || || Sbjct 5014 TCAACAGTAAACTGAATAGCATTTGCAGCGGGTTTTGTTCGTAAG-TAATACATTCCAGT 5072 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || || || ||| | || ||||| || || | |||||| ||||||| || || Sbjct 5073 TTTCAGTCCCATTTTCCATCCGTAAAAATGAATGGACGTTAATTTCCCATAATTGGGTTC 5132 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||||| ||||| ||||||||||| || || || || |||||||| |||| ||| Sbjct 5133 AGCTACATGAATATTAAACGACTGACTTTGGTCTATAAAAGCTCCACGATCGGCAGACAT 5192 Query 65257 GTCAATGATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | | | | || | || ||||| || || || || | || ||| Sbjct 5193 TTGAATT-TGTGTCTTGACGGAAATTTCCCAAACCGTTTTATATATATTTTTTATATCAT 5251 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 |||||| | |||||| ||| | ||||||| | ||||||||| || ||| Sbjct 5252 CTGGAATTTGCTCAATAGTCTGTATTGAACCATTATTTGCAATAATTTTGTTCTTCATAT 5311 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATG-TTGAACCAAG-TGACGATTGATGACTTG 65433 || ||| ||||| || | | || |||| ||| || |||| | ||||| Sbjct 5312 CGTCATCCCATAAACCACGTTCAGTCAAATCCTTGAT--AAGATGGTGATTAACAACTTG 5369 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 || || || || |||||||| ||| | || ||| ||||||||| || Sbjct 5370 AAATTCACCACTGAGAACACGACGATTATAAACATTACTTGTGTAAGGTTCAAAGCTCTC 5429 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 | | || || | ||| || ||||| ||||| || ||||| || || | || | ||| || Sbjct 5430 ATTATTACCCAAAATCTGAGCAGTTGATGCTGTCGGCATTGGTGCAATTAAGAGTGAATT 5489 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTA 65611 ||| | || | ||| ||| || | | | ||||| | ||||| ||||| Sbjct 5490 TCGGAGACCAAACTTTTTAATTTTTTCTTTTAGAGCTTCCCAATCCCACAAATCGGTGGG 5549 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 ||| |||| |||||||| | ||| | || | |||| | || Sbjct 5550 A-GTCTT-ATCC------CACATATCATATTGTAATACACCTTTTGACACCGGACATCCA 5601 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | || | || || |||| | | || | || |||||||| ||| | ||| || Sbjct 5602 TCGTAAGTCTCATATGGTCCCAATTGTTCTGCTAATTCACAGCTGGACTCCAATGCACCA 5661 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATT--AAGTTCACGTGCCTCATCGCTCTCGTACG 65789 ||||||| || || || || || |||| || || || | || | || || | Sbjct 5662 TAATAAATTGTTTCAAATATTTGTTGATTTAAATTTTTCG--CTTCGTTAGATTCATATG 5719 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 |||| | ||||| | ||||| || |||| |||||||||||||| || || ||||||| Sbjct 5720 GCATTCTCATCAAAATAAAAGCATCTGCCAATCCTTGAACTCCAATTCCAATAGGACGAT 5779 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 | | || || || ||| | || || || || |||||||| | | ||||| || Sbjct 5780 GTCTAAAGTTTGACCGTTTAGCTTCTTCAACGGGATAGTAATTTACGTTAATAATTTTAT 5839 Query 65910 TCAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTT 65967 ||||||| | ||| || | | | || || ||||| | || ||| | | | | Sbjct 5840 TCAAATTCCTTGTGACTATTTTT--GTAACTTCCTTCAATTTGTGAAAGTCATATTCTCT 5897 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 |||| | || |||||| | | |||| ||||| | || || Sbjct 5898 T---CGATTTTGTTTG---------ACAAACATATTTAAAGCAATTGATGCTAAATTACA 5945 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 || || | || || | | ||| | || ||||| || || | ||| || || Sbjct 5946 AACTGCAACTTCATCCTTACTTGAATATTGTACTATTTCCGTACATAAATTCGAACAACG 6005 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 ||| || || | |||||||||||| || || ||||||| |||||| |||| ||| || Sbjct 6006 TATTGTCCCAAGATTCTGTTGATTTGATTTCCGGTTGCATGAATCCTTATACAGCATATA 6065 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || || || || || ||||| | ||||||||| ||| ||| | | | ||||||| || Sbjct 6066 AGGTGTACCAGTTTCTACTTGAGCCTCAATGATTGCGAACCACAAATCTTGTGCCTTTAC 6125 Query 66208 CGTACGTACCGCCCTACCTT-TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 ||| | ||| |||| ||| ||| || ||| || || | | || |||| Sbjct 6126 TTGACGAATATACCTTCCTTCTGC-TTCATAGCCTTCATAAAGTTTCACAAATTCCTCAC 6184 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 | | ||| | |||| |||| | | |||||||| | ||||| ||| | Sbjct 6185 CGTACGATTCAAAAAGACCGGGACTACTATTAGGACACATTAATGACCACATTTCATTGT 6244 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| || |||||||| || | ||| || ||||| | || || || | || | |||| Sbjct 6245 TTTCAACCCGACGCATGAACAAATCTGGAATCCACAATGCATAAAACATGTCTCTAGCTC 6304 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 || || | || |||||| || || || || ||||| || || |||||| Sbjct 6305 TGACTTCTTCTTTTCCAGTATTTTTCTTTAAATCCAGAAATTCAAAAATATCACCATGCC 6364 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | ||||||| || || || |||| ||| |||||| ||||||||||| || || | Sbjct 6365 AAGGTTCCAAATATATTGCAAACGCGCCTGGACGTTTATTTCCACCTTGGTCAACATAAC 6424 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 | ||| ||| ||| | || | ||||| || || || || || || | ||||| || | Sbjct 6425 GTGCGGTATTATTGTATACTCTTAACATTGGAACAAGGCCATTTGAAATCCCATTTGTAC 6484 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 | | || | |||| ||| || || |||||||| | |||||| ||||| || Sbjct 6485 CAGCTATATATGTTCCTTTTGCTCGAATGCAATGAACATTAACACCAATTCCACCTGC 6542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441899506000