Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq158 259 1e-66 seq89 214 4e-53 seq4 163 6e-38 seq48 143 6e-32 >seq158 Length=85213 Score = 259 bits (286), Expect = 1e-66 Identities = 223/276 (81%), Gaps = 14/276 (5%) Strand=Plus/Minus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 49680 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCA 49621 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||||| ||||||||||||||||| ||| || |||| | |||||||| ||||||||||| Sbjct 49620 GTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAAGCCATTACCTT 49561 Query 180 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 239 |||||||| |||||| | ||||||||||| ||| |||| || || Sbjct 49560 ACCAACTAACTAATCTAATATAGGCTCATCTAATA--GCAA-----TAA-------ATCT 49515 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| ||| |||| ||||| ||||||||| |||||||| | |||| || ||||| | Sbjct 49514 TTCCCCCTTAGGGCGTATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTA 49455 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || ||||||||| ||||||||||||||| ||| || Sbjct 49454 GGTAGATTCCTATACATTACTCACCCGTCTGCCACT 49419 >seq89 Length=3091062 Score = 214 bits (236), Expect = 4e-53 Identities = 166/195 (85%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | ||||| ||||| | ||| |||||||| ||| || ||||||||||||||| Sbjct 1197945 TTTACGAGCCGAAACCCTTCAT-CACTCACGCGGCGTTG-CTCCGTCAGGCTTTCGCCCA 1197888 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197887 TTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 1197828 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | ||||| |||||||| | | |||| |||||||||||||| |||| |||||| || Sbjct 1197827 GTGGCCGATCACCCTCTCAGGTCGGCTACGTATCGTCGCCTTGGTAAGCCGTTACCTTAC 1197768 Query 182 CAACTAGCTAATCCG 196 |||||||||||| || Sbjct 1197767 CAACTAGCTAATACG 1197753 Score = 214 bits (236), Expect = 4e-53 Identities = 166/195 (85%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | ||||| ||||| | ||| |||||||| ||| || ||||||||||||||| Sbjct 1472091 TTTACGAGCCGAAACCCTTCAT-CACTCACGCGGCGTTG-CTCCGTCAGGCTTTCGCCCA 1472034 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1472033 TTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 1471974 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | ||||| |||||||| | | |||| |||||||||||||| |||| |||||| || Sbjct 1471973 GTGGCCGATCACCCTCTCAGGTCGGCTACGTATCGTCGCCTTGGTAAGCCGTTACCTTAC 1471914 Query 182 CAACTAGCTAATCCG 196 |||||||||||| || Sbjct 1471913 CAACTAGCTAATACG 1471899 >seq4 Length=17479078 Score = 163 bits (180), Expect = 6e-38 Identities = 167/217 (77%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 51 GCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 110 |||| ||||||| || |||||||| ||||||| |||||||||||||| | || ||| ||| Sbjct 12966655 GCTTGCGCCCATGGTGCAATATTCTCCACTGCCGCCTCCCGTAGGAGGCAGGGCCGAGTC 12966596 Query 111 TCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 |||| || ||||| |||||||||||||||||||| || |||||||| || |||| | Sbjct 12966595 CCAGTCCCGGTGTGGCTGATCATCCTCTCAGACCAACTATAGATCGTCGACTACGTGAAC 12966536 Query 171 CATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGG 230 |||||||| ||| ||||||||||| | | || ||||| || | | ||| | ||| Sbjct 12966535 CATTACCTTACCTACTAGCTAATCTCATATGGGTTCATCCGAAGGTGTGAGG-CAAAAGA 12966477 Query 231 TCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 ||||| |||| | | || ||||||||||||| Sbjct 12966476 TCCCCCACTTTGTTTCTCAGAGATTATGCGGTATTAG 12966440 >seq48 Length=4448091 Score = 143 bits (158), Expect = 6e-32 Identities = 95/103 (92%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||||| ||| || |||| || ||||||||||||||||||||| Sbjct 3382926 CTTTACAACCCAAAGGCCTTCTT-CACTCATGCGGTAT-GGCTGGATCAGGCTTTCGCCC 3382983 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 103 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3382984 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 3383026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071984970560