Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq89 271 2e-70 seq158 250 6e-64 seq4 212 2e-52 seq48 147 5e-33 seq139 96.9 8e-18 >seq89 Length=3091062 Score = 271 bits (300), Expect = 2e-70 Identities = 318/423 (75%), Gaps = 19/423 (4%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||| ||| |||||||| | ||| | |||||||| |||||||| Sbjct 1197945 TTTACGAGCCGAAACCCTTCATCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATT 1197886 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197885 GCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 1197826 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| | |||| | |||||||||| ||| ||| ||||| ||| Sbjct 1197825 GGCCGATCACCCTCTCAGGTCGGCTACGTATCGTCGCCTTGGTAAGCCGTTACCTTACCA 1197766 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 |||||||||| | |||| |||| ||||| | || | || | |||| | Sbjct 1197765 ACTAGCTAATACGGCGCGGGTCCATCTATAAGTGATA-GCAAAACCATCTTTCACTTTAG 1197707 Query 245 --TCTTGCG-------ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 | |||| | ||||| |||||||||| | |||||| | |||||||| || Sbjct 1197706 AACCATGCGGTTCCAAATGTTATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAGTC 1197647 Query 296 CATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT--CGTCAGCGAAGCAGCA 352 ||| | ||| |||| ||||||||||||||||| || ||||| ||| |||| Sbjct 1197646 TTATAGGTAGGTTACCCACGTGTTACTCACCCGTCCGCCGCTAACGTCA---AAGGAGCA 1197590 Query 353 AGCTGCTT-CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||| ||| ||||| || ||||||||||||| |||||| |||||||||||||| || Sbjct 1197589 AGCTCCTTATCTGTT--CGCTCGACTTGCATGTATTAGGCACGCCGCCAGCGTTCATCCT 1197532 Query 412 GAG 414 ||| Sbjct 1197531 GAG 1197529 Score = 271 bits (300), Expect = 2e-70 Identities = 318/423 (75%), Gaps = 19/423 (4%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||| ||| |||||||| | ||| | |||||||| |||||||| Sbjct 1472091 TTTACGAGCCGAAACCCTTCATCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATT 1472032 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1472031 GCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 1471972 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| | |||| | |||||||||| ||| ||| ||||| ||| Sbjct 1471971 GGCCGATCACCCTCTCAGGTCGGCTACGTATCGTCGCCTTGGTAAGCCGTTACCTTACCA 1471912 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 |||||||||| | |||| |||| ||||| | || | || | |||| | Sbjct 1471911 ACTAGCTAATACGGCGCGGGTCCATCTATAAGTGATA-GCAAAACCATCTTTCACTTTAG 1471853 Query 245 --TCTTGCG-------ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 | |||| | ||||| |||||||||| | |||||| | |||||||| || Sbjct 1471852 AACCATGCGGTTCCAAATGTTATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAGTC 1471793 Query 296 CATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT--CGTCAGCGAAGCAGCA 352 ||| | ||| |||| ||||||||||||||||| || ||||| ||| |||| Sbjct 1471792 TTATAGGTAGGTTACCCACGTGTTACTCACCCGTCCGCCGCTAACGTCA---AAGGAGCA 1471736 Query 353 AGCTGCTT-CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||| ||| ||||| || ||||||||||||| |||||| |||||||||||||| || Sbjct 1471735 AGCTCCTTATCTGTT--CGCTCGACTTGCATGTATTAGGCACGCCGCCAGCGTTCATCCT 1471678 Query 412 GAG 414 ||| Sbjct 1471677 GAG 1471675 >seq158 Length=85213 Score = 250 bits (276), Expect = 6e-64 Identities = 270/355 (76%), Gaps = 16/355 (5%) Strand=Plus/Minus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 49680 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCA 49621 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| ||||||||||||| |||||| |||| | |||| ||| ||||||||| Sbjct 49620 GTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAAGCCATTACCTT 49561 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||| |||||| || | || ||||| |||| | | || | ||| || Sbjct 49560 ACCAACTAACTAATCTAATATAGGCTCATCTAATAGCAATA------AATCTTTCCCCCT 49507 Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 | || ||| ||| ||||||||| ||||||||| |||| || | | | Sbjct 49506 TAGG----GCG----TATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTA 49455 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCT 359 || || |||| | |||||||||||||||| |||||| || | | |||||||| | Sbjct 49454 GGTAGATTCCTATACATTACTCACCCGTCTGCCACTAAGTTATACCA-TAGCAAGCTACA 49396 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 49395 ATATAACCCCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCATTCTGAG 49341 >seq4 Length=17479078 Score = 212 bits (234), Expect = 2e-52 Identities = 178/217 (82%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 52 GCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111 |||||||||||| ||||||||||| ||||||| |||||||||||||| | || ||| ||| Sbjct 12966655 GCTTGCGCCCATGGTGCAATATTCTCCACTGCCGCCTCCCGTAGGAGGCAGGGCCGAGTC 12966596 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 |||| || ||||||||| |||||||||||||||| ||| |||||||| ||| ||| | Sbjct 12966595 CCAGTCCCGGTGTGGCTGATCATCCTCTCAGACCAACTATAGATCGTCGACTACGTGAAC 12966536 Query 172 CATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG 231 ||||||| || ||||||||||| ||| ||||||||||||| ||| |||| | ||| Sbjct 12966535 CATTACCTTACCTACTAGCTAATCTCATATGGGTTCATCCGAAGGTGTGAGG-CAAAAGA 12966477 Query 232 TCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAG 268 |||||| ||||| | | || |||||||||||||| Sbjct 12966476 TCCCCCACTTTGTTTCTCAGAGATTATGCGGTATTAG 12966440 >seq48 Length=4448091 Score = 147 bits (162), Expect = 5e-33 Identities = 93/101 (92%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||||||| || |||| ||||||| ||||||||| ||||||| Sbjct 3382926 CTTTACAACCCAAAGGCCTTCTTCACTCATGCGGTATGGCTGGATCAGGCTTTCGCCCAT 3382985 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 104 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 3382986 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 3383026 >seq139 Length=265047 Score = 96.9 bits (106), Expect = 8e-18 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 114 AGTTCCAGTGTGGCTGGTCATCCTCTC-AGACCAGCTAGGGATCGTCGCCTAGGTGGGCC 172 |||||||||||||||| ||||| |||| ||| |||||||||| ||||| ||| | | | Sbjct 150674 AGTTCCAGTGTGGCTGCTCATCTTCTCAAGATTAGCTAGGGATTGTCGCTTAGATCAGGC 150615 Query 173 ATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGT 232 ||| | | |||||||||| | ||||||||| ||| ||| ||| | |||| ||||| Sbjct 150614 ATTGCGCTTTGTACTAGCTAATTCTATCTGGGTTTATCTGATGGTGTGGGGCCTGAAGGA 150555 Query 233 C---CCCCTCTTTGGTCTT-GCGACGTTAT 258 | |||| |||| |||| | || ||||| Sbjct 150554 CGGACCCCACTTT-ATCTTCGAGATGTTAT 150526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222382861952