Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq89 421 2e-115 seq48 264 3e-68 seq158 181 3e-43 seq4 129 2e-27 >seq89 Length=3091062 Score = 421 bits (466), Expect = 2e-115 Identities = 401/512 (78%), Gaps = 38/512 (7%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||||||||||||||| |||||||||||| || | || ||||||| | | Sbjct 1471751 AGCGGCGGACGGGTGAGTAACACGTGGGTAACCTACCTATAAGACTGGGATAACTTCGGG 1471810 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| |||||||| ||||| || | | |||||||| | | |||| | | Sbjct 1471811 AAACCGGAGCTAATACCGGATAACATT-TGGAACCGCATGGTTCTAAAGTGAAAGAT--G 1471867 Query 143 GC---GGTA-CAG-----GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCT 193 | | || || ||| |||||||| | |||||||||||||||||||||||||| Sbjct 1471868 GTTTTGCTATCACTTATAGATGGACCCGCGCCGTATTAGCTAGTTGGTAAGGTAACGGCT 1471927 Query 194 TACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1471928 TACCAAGGCGACGATACGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGAACTGAGAC 1471987 Query 254 ACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 |||||||| ||||||||||||||||||||| |||||| || | |||||||| |||||||| Sbjct 1471988 ACGGTCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTG 1472047 Query 314 ATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA 373 | | |||||||||||||||| |||||||| ||||| ||||||| |||||| | | ||| Sbjct 1472048 ACGGAGCAACGCCGCGTGAGTGATGAAGGGTTTCGGCTCGTAAAACTCTGTTATTAGGGA 1472107 Query 374 AGA---------TAA----------------TGACGGTACTTGAGGAGGAAGCCCCGGCT 408 ||| ||| ||||||||| | | || ||||| ||||| Sbjct 1472108 AGAACAAATGTGTAAGTAACTGTGCACATCTTGACGGTACCTAATCAGAAAGCCACGGCT 1472167 Query 409 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 468 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | || Sbjct 1472168 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTA-TTGG 1472226 Query 469 GCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| | ||||||| ||||||||||||| Sbjct 1472227 GCGTAAAGCGCGCGTAGGCGGTTTCTTAAGTC 1472258 Score = 416 bits (460), Expect = 8e-114 Identities = 398/509 (78%), Gaps = 38/509 (7%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||||||||||||||| |||||||||||| || | || ||||||| | | Sbjct 1197605 AGCGGCGGACGGGTGAGTAACACGTGGGTAACCTACCTATAAGACTGGGATAACTTCGGG 1197664 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| |||||||| ||||| || | | |||||||| | | |||| | | Sbjct 1197665 AAACCGGAGCTAATACCGGATAACATT-TGGAACCGCATGGTTCTAAAGTGAAAGAT--G 1197721 Query 143 GC---GGTA-CAG-----GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCT 193 | | || || ||| |||||||| | |||||||||||||||||||||||||| Sbjct 1197722 GTTTTGCTATCACTTATAGATGGACCCGCGCCGTATTAGCTAGTTGGTAAGGTAACGGCT 1197781 Query 194 TACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1197782 TACCAAGGCGACGATACGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGAACTGAGAC 1197841 Query 254 ACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 |||||||| ||||||||||||||||||||| |||||| || | |||||||| |||||||| Sbjct 1197842 ACGGTCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTG 1197901 Query 314 ATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA 373 | | |||||||||||||||| |||||||| ||||| ||||||| |||||| | | ||| Sbjct 1197902 ACGGAGCAACGCCGCGTGAGTGATGAAGGGTTTCGGCTCGTAAAACTCTGTTATTAGGGA 1197961 Query 374 AGA---------TAA----------------TGACGGTACTTGAGGAGGAAGCCCCGGCT 408 ||| ||| ||||||||| | | || ||||| ||||| Sbjct 1197962 AGAACAAATGTGTAAGTAACTGTGCACATCTTGACGGTACCTAATCAGAAAGCCACGGCT 1198021 Query 409 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 468 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | || Sbjct 1198022 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTA-TTGG 1198080 Query 469 GCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||||||| | ||||||| |||||||||| Sbjct 1198081 GCGTAAAGCGCGCGTAGGCGGTTTCTTAA 1198109 >seq48 Length=4448091 Score = 264 bits (292), Expect = 3e-68 Identities = 201/235 (86%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| | Sbjct 3383026 TCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCC 3382967 Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 ||| | |||| |||| || ||||||||| |||| |||||||||| || |||||||| Sbjct 3382966 AGCCATACCGCATGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGGTGAGGAAGAT 3382907 Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 | |||||||||| || |||| || |||||||| |||||||||||||||||||||||| Sbjct 3382906 AGTGACGGTACTCACAGAAGAAGTCCTGGCTAACTCCGTGCCAGCAGCCGCGGTAATACG 3382847 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG-TGGTT 491 || ||||||||||||| |||||||| | |||||||||| | ||||||| ||||| Sbjct 3382846 GAGAGGGCTAGCGTTATTCGGAATTA-TTGGGCGTAAAGAGCGCGTAGGCTGGTT 3382793 >seq158 Length=85213 Score = 181 bits (200), Expect = 3e-43 Identities = 121/135 (90%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||||||||||||||| ||||||||||||| | |||| |||| || ||||||| Sbjct 49546 GATTAGTTAGTTGGTAAGGTAATGGCTTACCAAGGCAATGATCTATAGCTGATCTGAGAG 49605 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 49606 GATGATCAGCCACACTGGAACTGAGATACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 49665 Query 287 GAATATTGCACAATG 301 |||||||| |||||| Sbjct 49666 GAATATTGGACAATG 49680 >seq4 Length=17479078 Score = 129 bits (142), Expect = 2e-27 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| |||||||||| || | || || |||||||| ||| | ||||||| Sbjct 12966512 GATTAGCTAGTAGGTAAGGTAATGGTTCACGTAGTCGACGATCTATAGTTGGTCTGAGAG 12966571 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| || |||| ||| ||| || |||||||||||||| ||||||| Sbjct 12966572 GATGATCAGCCACACCGGGACTGGGACTCGGCCCTGCCTCCTACGGGAGGCGGCAGTGGA 12966631 Query 287 GAATATTGCACAATGGGCAAAAGC 310 ||||||||||| |||||| |||| Sbjct 12966632 GAATATTGCACCATGGGCGCAAGC 12966655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497579003648