Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq89 156 9e-36 seq158 125 2e-26 seq48 93.3 9e-17 seq4 91.5 3e-16 >seq89 Length=3091062 Score = 156 bits (172), Expect = 9e-36 Identities = 208/285 (73%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCC-CACA-- 57 ||||||||||||| ||||||||| |||| | || |||||| |||| | |||| Sbjct 1198039 GGCTGCTGGCACGTAGTTAGCCGTGGCTTTCTGATTAGGTACCGTCAAGATGTGCACAGT 1197980 Query 58 --CGTGGAAGGTT-TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | | | || || |||||| |||| ||| ||||| | ||| | | |||||||| Sbjct 1197979 TACTTACACATTTGTTCTTCCCTAATAACAGAGTTTTACGAGCCGAA-ACCCTTCATCAC 1197921 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||| |||| || ||| |||||| || ||||| ||||||||||| Sbjct 1197920 TCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTC 1197861 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| || | |||||||| | || Sbjct 1197860 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCCGATCACCCTCTCAGGTCGGCT 1197801 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | || ||| ||||||||| || |||| ||||| Sbjct 1197800 ACGTATCGTCGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAAT 1197756 Score = 156 bits (172), Expect = 9e-36 Identities = 208/285 (73%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCC-CACA-- 57 ||||||||||||| ||||||||| |||| | || |||||| |||| | |||| Sbjct 1472185 GGCTGCTGGCACGTAGTTAGCCGTGGCTTTCTGATTAGGTACCGTCAAGATGTGCACAGT 1472126 Query 58 --CGTGGAAGGTT-TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | | | || || |||||| |||| ||| ||||| | ||| | | |||||||| Sbjct 1472125 TACTTACACATTTGTTCTTCCCTAATAACAGAGTTTTACGAGCCGAA-ACCCTTCATCAC 1472067 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||| |||| || ||| |||||| || ||||| ||||||||||| Sbjct 1472066 TCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTC 1472007 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| || | |||||||| | || Sbjct 1472006 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCCGATCACCCTCTCAGGTCGGCT 1471947 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | || ||| ||||||||| || |||| ||||| Sbjct 1471946 ACGTATCGTCGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAAT 1471902 >seq158 Length=85213 Score = 125 bits (138), Expect = 2e-26 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146 CATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCA 205 ||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 49680 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCA 49621 Query 206 ATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCC 265 ||||| || | |||||||||| | |||| ||| | | || ||| ||| ||||| Sbjct 49620 GTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGCCTTGGTAAGCCATTACCTT 49561 Query 266 GCCTACTACCTAAT 279 || |||| ||||| Sbjct 49560 ACCAACTAACTAAT 49547 >seq48 Length=4448091 Score = 93.3 bits (102), Expect = 9e-17 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || || ||||| || ||| || ||||||| |||| || | Sbjct 3382920 AAAGAGCTTTACAACCCAAAGG-CCTTCTTCACTCATGCGGTATGGCTGGATCAGGCTTT 3382978 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGA 189 || |||||| |||||||||| |||||||||||||||||||||| |||| Sbjct 3382979 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 3383026 >seq4 Length=17479078 Score = 91.5 bits (100), Expect = 3e-16 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||| | |||||||| |||||| |||||||||||||| || ||| ||| |||| Sbjct 12966650 CGCCCATGGTGCAATATTCTCCACTGCCGCCTCCCGTAGGAGGCAGGGCCGAGTCCCAGT 12966591 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 || ||||| || | |||||||||| | |||| ||||| | ||| ||| || ||| Sbjct 12966590 CCCGGTGTGGCTGATCATCCTCTCAGACCAACTATAGATCGTCGACTACGTGAACCATTA 12966531 Query 262 CCCCGCCTACTACCTAAT 279 || ||||||| ||||| Sbjct 12966530 CCTTACCTACTAGCTAAT 12966513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068785015424