Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_009761.3 Length=42232 Score E Sequences producing significant alignments: (Bits) Value seq89 179 1e-40 >seq89 Length=3091062 Score = 179 bits (198), Expect = 1e-40 Identities = 240/330 (73%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 11677 TAAATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACC 11736 ||||||||||| ||| | ||||| ||||||||||| | ||| ||||||| || || Sbjct 140634 TAAATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACA 140575 Query 11737 ACTCAAAGTGGTGTAAATGTAGCATCATTCACATTAGCAGTTAATCGTACATTTACAAAT 11796 || | || || | ||| || | || || ||||||| || ||||| ||||||||| Sbjct 140574 ACACCCTCAGGCGTGAGTGTTGCGACTTTTACTCTAGCAGTAAACCGTACGTTTACAAAT 140515 Query 11797 GCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTATTTAAAAAACAAGCAGAG 11856 || ||||| || ||||| ||||| || || ||| |||| |||| |||||||||||| Sbjct 140514 GCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTTTTAGAAAACAAGCAGAT 140455 Query 11857 AACGTTAATAAATACCTATCTAAAGGATCGTTGA-CGGGCGTAGATGGTAGGTTACAAAC 11915 || || ||||| ||| | | ||||| | ||| | ||||||| || ||| | | ||| | Sbjct 140454 AATGTAAATAACTACTTGTTCAAAGG-TAGTTTAGCGGGCGTTGACGGTCGCATTCAATC 140396 Query 11916 GCGGAATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAG 11975 || | |||||||| | ||||| | ||||| | ||| || ||||| || |||||| Sbjct 140395 ACGTAGCTATGAAAACCAAGAAGGACGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAG 140336 Query 11976 TATTCAATTTTTAGAACCGAAAAACTCAAA 12005 ||||||| | ||||| ||||| ||||| Sbjct 140335 CGTTCAATTCCTTGAACCTAAAAA-TCAAA 140307 Score = 111 bits (122), Expect = 4e-20 Identities = 161/219 (74%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 1802 TTCTTTTTGTGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTAT 1860 |||||| || || ||| |||| ||||||| ||||||| ||| | || || |||||| Sbjct 2303273 TTCTTTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTAT 2303215 Query 1861 CTGTGTATGGATCTTTATACTTCTCGTAGTATCTGTATTTAGTTTCGTTAtttttgtttt 1920 | |||||| ||||||||||||| || | | ||||||||||| | ||| | || Sbjct 2303214 CCGTGTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTT 2303155 Query 1921 taaatttttCAATCCACAT-GTTTATACCTCC-TGCA---AGAACGTATGTTCTATA-AA 1974 |||||| ||| |||||| | ||| ||||| | || |||||||| |||| ||| || Sbjct 2303154 TAAATTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAA 2303095 Query 1975 ATATTAAAAAATAATAAGGGTAGTCGG-GCTACCCAAAA 2012 | |||| ||||||| |||| ||| || || ||||||| Sbjct 2303094 AGATTAGAAAATAAATAGGGCAGTAGGAACTGCCCAAAA 2303056 Score = 89.7 bits (98), Expect = 1e-13 Identities = 125/170 (74%), Gaps = 9/170 (5%) Strand=Plus/Minus Query 678 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaaGGGCAGATTTAAGC 734 ||| |||||||| | |||| ||||| ||||| || ||||| |||||||| | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAA-GGGCAGATAGAT-- 2303941 Query 735 TAACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGA 794 ||||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| Sbjct 2303940 TAACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGC 2303882 Query 795 GTATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 844 || ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303881 GTGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135018552072456