Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq105 141 7e-29 seq13 105 5e-18 >seq105 Length=1502237 Score = 141 bits (156), Expect = 7e-29 Identities = 296/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| || | || ||||| || || ||||| || || ||||| || || ||||| Sbjct 285642 TACCTCATCTGCAGATGTATATTCTACTATTTCTGTACAAAGATTGCTACATTTAATGGT 285583 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||||||||||||||| || || | ||||| ||||| ||||||| |||||| ||| Sbjct 285582 GCCCAAATTCTGTTGGTTGGATTTTCTGTTGCACGCATCTTTGTACAGCATGTAAGGAAC 285523 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA-AAG---AGCGCGTGCCTTCACCG 66209 ||||| || || || |||||||| || || | ||| ||| |||| || || Sbjct 285522 ACCGGTTTCCACCTGAGACTCAATTATAGCATTCCACAAGTTTCTTGCGTCAATTTGTCG 285463 Query 66210 TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCC 66269 || || || ||||| | ||| || | | | || || | || ||| || ||||| Sbjct 285462 TATATAACG----ACCTTCGTTTTCATATTTTACATACAGATCCTCAAAGTTTTTACCCC 285407 Query 66270 ATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTT 66329 | || || |||| ||||| || || || ||||| || ||| | || || Sbjct 285406 AGACGTCATGAAGACCAGGACATTTATGCGGGCACATAAGACTCCATTTCTTATTAGATT 285347 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 | || | ||| || | |||||| ||||| || || || || ||||| || || ||| Sbjct 285346 CAACCCTTTCCATGAACAAATCAGGAATCCAAAGTGCATAAAAAAGATCACGGGCCCGTA 285287 Query 66390 GCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 ||| || | || |||||| ||| ||||| |||||||| || || |||||||| | Sbjct 285286 CCTCTTCCTTTCCAGTATTTTTTTTCAAATCGAGAAACTCAAAAATATCAGCATGCCAAG 285227 Query 66450 GTTCCAGGTAGATGGCGAA 66468 | || ||||| || || || Sbjct 285226 GCTCGAGGTAAATTGCAAA 285208 >seq13 Length=9188118 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| || || || || || || |||||||| || || ||||| ||| | | ||||| Sbjct 3474885 CATGTTTTAGCATTTTTCGCTGCATCGGACGGGATTGTAAATGAAAATCTTGTCGAACGG 3474826 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || || || |||||| | || ||| | ||||||||||| || ||||| || || Sbjct 3474825 TTTTCTCAAGAAGTCCAAGTGACTGAAGCGAGGTGTTTCTACGGTTTTCAGATCGCAATA 3474766 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||| |||| || || ||||| |||| |||||||| |||||| Sbjct 3474765 GAAAATATCCATTCCGAAATGTATTCACTTCTAATCGATACTTACATC 3474718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561206805280