Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_011344.1 Length=47342 Score E Sequences producing significant alignments: (Bits) Value seq89 114 4e-21 >seq89 Length=3091062 Score = 114 bits (126), Expect = 4e-21 Identities = 450/696 (65%), Gaps = 65/696 (9%) Strand=Plus/Minus Query 1575 TTAGTATATGATCACGTATCTGTAGGACTTGGTTCATTTCTAAATAGTTGTACATTTTAG 1634 ||| |||| |||||||| | || ||||| ||||||| | |||||| || ||||| Sbjct 2303699 TTAATATAAATTCACGTATTTTTAACACTTGAATCATTTCAAGATAGTTATATATTTTT- 2303641 Query 1635 ATTCATCTTTTTCGATATCCTCTATTGTTTTTCTTCTTTTAGGAATTTTGACATTAGTTA 1694 ||| |||||||| ||||| |||| ||||| | | ||| | | || |||| | ||| Sbjct 2303640 -TTCTTCTTTTTCAATATCTTCTAGAGTTTTAGCTTTCTTAAGTACTTCTACATCATTTA 2303582 Query 1695 ACAAATATTCATTTGGATAATTGTAAAATTTAACTGCATATTTAATAGCTCCTTTCATAT 1754 ||| || | ||| | || | |||||||| ||||||| | |||| |||||||| Sbjct 2303581 ACATATGCTTATTAGTGTATCTATAAAATTTCGTTGCATATGCTAAAGCTTTTTTCATAT 2303522 Query 1755 CTCCGAGTTGACGGGTTACTTGATTTTGAGAATAGATATCTGATAATTTATTAATAAATA 1814 | ||||| || | ||||| |||| ||||| || | |||||| |||| || | | Sbjct 2303521 CATTAAGTTGTCGTATAACTTGGTTTTCTGAATAAATTTTAGATAATGTATTGATTAGTT 2303462 Query 1815 TCTGCATATATTTTGTATCTAGTTTGTTTAAAAGCAAGTTCTCAGAGCTGTATCGTTTAA 1874 | || | || |||| |||||| || | ||| || || |||| | || | Sbjct 2303461 TTTGGACATGTTTTACATCTAGCTT---TGAAA-------CT---AG-TGTA--GATTCA 2303418 Query 1875 TGTTTCTAATTCTTATTTTTATATTATTAAGAGTAGTCAACTTTGAACCTGATGTTTTTA 1934 | ||| ||||| | | |||| |||| | | ||| Sbjct 2303417 T----CTA-----TATTTCTCT----TTAA---------------AACCAGGCCTATTTT 2303386 Query 1935 TATGATATTCAAGCCATTCATCTAATAGCGCGTGAAAAGTCAAAGTTTTTAATTCGCTTG 1994 |||||||| || ||||| ||||||| |||| || || | ||||| || Sbjct 2303385 TATGATATGTAAACCATTGGTCTAATAAATTATGAATCGTTAATTCCTCTAATTTA-TTA 2303327 Query 1995 ACGACTTGTTGTTCAGt----ttttcttttattttttCTTCTAAACGAAACATTGCTTCT 2050 | || | ||||| || | |||||| | || ||||| | || | | |||| Sbjct 2303326 TTG---TGATTATCAGTAATCTTATTTTTTATCCTATCATCTAATTGGAATAAAGATTCT 2303270 Query 2051 TTTTGAGATTGTTTTGTATTCTTGTTCAACACAACACTTACGC-GCTTCCATTTATCTGT 2109 || ||||| ||| |||| ||||||| ||||||| ||| | || || ||||||| || Sbjct 2303269 TTCTGAGAAATTTTAGTATCTTTGTTCATTACAACACATACTCTGCGTC-ATTTATCCGT 2303211 Query 2110 GTATGGATCTTTGTACTTCTCGTAATATCTGTATTTAGTTTCGTTAtttttgtttttaaa 2169 |||| ||||| ||||||| || | | ||||||||||| | ||| | |||||| Sbjct 2303210 GTATAAGTCTTTATACTTCTTATATAAGCGGTATTTAGTTTTGCCTGCTTTATCTTTAAA 2303151 Query 2170 tttttCAATCCACAT-GTTTATACCTCCT----GTAGGAACGTACGTTC--TGTAAATTT 2222 || ||| |||||| | ||| |||||| | ||||||| |||| | |||| | Sbjct 2303150 TTGTTCTGACCACATAATGTATTCCTCCTTACATTTAGAACGTAAGTTCAATATAAAGAT 2303091 Query 2223 GTAAAAAATAATAAGGGTAGGTGG-GCTACCCAAAA 2257 || ||||||| |||| || || || ||||||| Sbjct 2303090 -TAGAAAATAAATAGGGCAGTAGGAACTGCCCAAAA 2303056 Score = 96.9 bits (106), Expect = 1e-15 Identities = 125/169 (74%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 924 AAGCGTTTTATAAAGCTTGTAAAAAATA---TAAGGGCaaaaaaaGGGCAGATTTAAGCT 980 ||| |||||||| | |||| ||||| ||||| || ||||||||||||| | | Sbjct 2303995 AAGGGTTTTATA--GGTTGTTCAAAATTAACTAAGGTCAGAAAAAGGGCAGATAGAT--T 2303940 Query 981 AACTTGGAATGTTTTCGAGTTTTTGAGTTAGTTCTCTATCCATTTTTTCAGTTACATGAG 1040 |||||||||| ||||| | ||| | |||| | | | |||| |||||| |||| ||| | Sbjct 2303939 AACTTGGAATATTTTCAAATTTCTAGGTTAACTGTTTGTCCA-TTTTTCTGTTAAATGCG 2303881 Query 1041 TATATATGCGAATGGTTGTTTTTTCATCTACATGTCCTACCCTTTTCAT 1089 | ||||| |||| || |||||||| || ||| || || |||||||| Sbjct 2303880 TGTATATTTGAATAGTAGTTTTTTCGTCAGTATGACCAACTCTTTTCAT 2303832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151370279832096