Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq157 87.8 6e-13 >seq157 Length=245904 Score = 87.8 bits (96), Expect = 6e-13 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 11681 AATCTTAAGAAATGGAACGAACAAGTTACAGCAAACTATCACAGCGCGACGTTGGTCGCG 11740 ||| |||| ||||||| | |||| |||||||||| ||||| | || ||| ||| | Sbjct 39992 AATATTAACAAATGGATAGTACAAACTACAGCAAACCGTCACAACAGGAAATTGATCGTG 40051 Query 11741 CAGAAACAGATTTACTCATCAACCTGTCAACGCTTACACAGCGCGGTCTGGCAAAGATGA 11800 | ||||| || || ||||||| ||| || | || || |||| | || || | Sbjct 40052 CTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTG 40111 Query 11801 TTGGCTGTCATGAATCGAAGATAAGCAGAACGGACTGGCGGTTTATTGCTTCGGTCTTGT 11860 || |||||||||||||| || || | || |||||||| ||||| || | || |||| Sbjct 40112 CCGGGTGTCATGAATCGAAAATCAGTCGCACCGACTGGCGCTTTATCGCCACTGTTTTGT 40171 Query 11861 GTG 11863 ||| Sbjct 40172 GTG 40174 Score = 82.4 bits (90), Expect = 3e-11 Identities = 192/290 (66%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 15715 CAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTCTGGCTTTTTGA 15774 ||||||| | || | || | |||||||| |||| || |||| | | | || | Sbjct 44988 CAAATCACACACCAGACCAGAGCACAAGGACACATGGCGCACACCGCCCGAGGTCTTCCA 45047 Query 15775 TGCGCTGGATATTGAGTTTGGATTCTGGCTGGATTCAGCTGCGAGCGACAAAAACGCTCT 15834 ||||||||| |||||||| |||| || ||| | || || | || | || || || Sbjct 45048 GGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCTGACCACGACAATGCCCT 45107 Query 15835 GTGCGCTCACTGGCTAACTGAGGCTGACGACGCGCTAAATTCTGAGTGGATAAGCCACGG 15894 |||| || | || || | | || || || || | ||| |||| ||| |||| Sbjct 45108 GTGCCGTCTGTATCTGACGCAAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCAACGG 45167 Query 15895 TGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGA 15954 || |||| || || ||||||||||||||| | || ||||| || ||||| ||||| Sbjct 45168 AGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGA 45227 Query 15955 GCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGATA 16004 |||| || | ||| | ||||| || ||||| |||| | |||| Sbjct 45228 GCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCTGATA 45277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175542677385192