Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cimex_20lectularius_20[refseq_20GCF_5F000648675.1_202014-05-01] 1,402 sequences; 650,477,627 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq89 910 0.0 seq140 109 2e-19 >seq89 Length=3091062 Score = 910 bits (1008), Expect = 0.0 Identities = 970/1268 (76%), Gaps = 18/1268 (1%) Strand=Plus/Minus Query 1654 AAGGAGAGTATTGTAATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCA 1713 ||||||| ||| ||| |||||||||| ||||| ||||| || |||||||| |||||| Sbjct 2745490 AAGGAGATTATAAACATGCCAATTATTACAGATGTTTACGCTCGCGAAGTCCTAGACTCA 2745431 Query 1714 CGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGT 1773 || |||||||||||| ||||||||||||| | || || ||| || || ||||||| Sbjct 2745430 CGTGGTAACCCAACAGTTGAAGTAGAAGTATTAACAGAGAGTGGCGCTTTTGGTCGCGCA 2745371 Query 1774 ATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGAC 1833 | ||||| ||||| || || ||||||||||| |||||||||||| | ||||| ||||| Sbjct 2745370 TTAGTTCCATCAGGTGCGTCTACTGGTGAACATGAAGCAGTAGAATTACGTGACGGTGAT 2745311 Query 1834 AAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATT 1893 ||| | |||||| ||| ||| | ||||||||||| || || ||| | |||| Sbjct 2745310 AAATCACGTTACTTAGGTAAAGGTGTTACTAAAGCAGTTGACAATGTTAACGAAATTATC 2745251 Query 1894 GCTG-AGCACATCATCGGATTCGACGTA-CGTGATCA--ACAAGGTATTGACCGCGCAA- 1948 || || || | |||| | || | || || | ||||| ||| | || || Sbjct 2745250 GCACCAGAACTT-ATCGAAGGTGAATTTTCGGTATTAGAACAAG-TATCAATCGATAAAA 2745193 Query 1949 TGATCGCTC---TTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTG 2005 |||| || | ||||||||| ||||||||||||| | || || ||||||||||||| Sbjct 2745192 TGATGATTCAATTAGACGGTACTGAAAACAAAGGTAAATTAGGCGCTAACGCTATTCTTG 2745133 Query 2006 GTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCT 2065 |||| ||||| || |||||||| ||||| ||||| | |||| | |||||||||| | Sbjct 2745132 GTGTTTCTATTGCAGTAGCACGTGCAGCAGCTGATTTACTTGGACAACCACTTTACAAAT 2745073 Query 2066 ACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTG 2125 | | || ||||| ||| |||| | || ||||||||||||||| | ||||||| Sbjct 2745072 ATTTAGGTGGATTTAACGGTAAACAATTACCTGTACCAATGATGAACATCGTTAACGGTG 2745013 Query 2126 GTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCAC 2185 ||||||||||||| ||||| ||||| ||||||||||||||| | |||||| || ||| Sbjct 2745012 GTTCTCACTCAGATGCTCCTATCGCATTCCAAGAATTTATGGTATTACCTGTAGGCGCAG 2744953 Query 2186 CAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAA-AATC 2244 |||||| |||||| || | |||||||| ||||||||||||||| ||||| | |||| Sbjct 2744952 AAACATTTAAAGAATCGTTACGTTGGGGAGCTGAAATCTTCCACAA-CTTAAAATCAATC 2744894 Query 2245 CTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTC 2304 |||||||| ||||| | |||||||| ||||| ||||||||||| || |||||| || Sbjct 2744893 CTTAAAGACCGTGGTTTAGAAACAGCAGTAGGCGACGAAGGTGGCTTTGCACCTAAATTT 2744834 Query 2305 GACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTA 2364 || || |||||||||| ||||||||| ||| | |||| || |||| | ||| | | Sbjct 2744833 GAAGGTACTGAAGATGCTGTTGAAACAATCTTAGAAGCGATTAAAGCAGTTGGTTTAGAG 2744774 Query 2365 CCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAA 2424 ||||||||||||||||| | || | |||||||| || || ||||||| || | | Sbjct 2744773 CCAGGTAAAGACGTATTCTTAGGCTTCGACTGTGCTTCTTCAGAATTCTTTGAAG----A 2744718 Query 2425 CGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCA 2484 || ||||| ||||| ||||||| ||||||||| | ||| |||| |||| | Sbjct 2744717 CG--GCGTTTATAACTACGCTAAATTCGAAGGTGAAAATGGTGCGAAACGTAACGCTGAA 2744660 Query 2485 GAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGAT 2544 |||||| | |||||| | |||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 2744659 GAACAAGTTGACTACTTAGAAGAATTAGTTAATAAATATCCAATTATCACTATTGAAGAT 2744600 Query 2545 GGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAA 2604 |||||||| ||||| ||||||||||| |||||| | || || ||| | |||| ||| Sbjct 2744599 GGTATGGATGAAAATGACTGGGACGGCTGGAAAGTATTAACAGATCGTATCGGTGACAAA 2744540 Query 2605 GTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATT 2664 || ||||| ||||||||||| || ||||| || ||||| | | | | ||||||| Sbjct 2744539 GTACAATTAGTTGGTGACGATTTATTCGTTACAAACACAGTTAAATTATCTGAAGGTATC 2744480 Query 2665 GCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAA 2724 | | || | ||||||||| | ||||||||||||||||| ||||| || || ||| Sbjct 2744479 GAAAAAGGTATCGGTAACTCAATTTTAATCAAAGTTAACCAAATTGGTACATTAACAGAA 2744420 Query 2725 ACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGT 2784 || ||||||||||| |||||||| || ||||||| ||||| ||||| ||||| |||||| Sbjct 2744419 ACATTTGACGCTATTGAAATGGCTCAAAAAGCTGGTTACACTGCAGTTGTATCTCACCGT 2744360 Query 2785 TCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAA 2844 ||||||||||| |||||| | ||||| |||| || || ||||||||||||||||||||| Sbjct 2744359 TCAGGTGAAACAGAAGATACTACAATTTCTGACATCGCTGTTGCAACTAACGCTGGTCAA 2744300 Query 2845 ATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGT 2904 || || || |||||||| ||| | |||||||||||||| |||||||||||||| | ||| Sbjct 2744299 ATCAAAACTGGTTCATTATCAAGAACTGACCGTATTGCAAAATACAACCAATTATTACGT 2744240 Query 2905 ATCGAAGA 2912 || ||||| Sbjct 2744239 ATTGAAGA 2744232 >seq140 Length=128311 Score = 109 bits (120), Expect = 2e-19 Identities = 254/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| || || || | || ||||||| ||| ||| | |||| || || |||| Sbjct 113796 AAATATCCTATAATTTCCATAGAAGATGCGATGAGTGAAGATGACTACGAAGGCTGGAGG 113855 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 | ||||||| | | || || |||| |||||||||| || || || || || || || Sbjct 113856 TTACTTACTGCAAGGCTGGGAAATAAAATTCAATTGGTCGGGGATGATTTGTTTGTTACA 113915 Query 2638 AACACTG--CTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCA 2695 || || || | | ||||| || | ||| | || || | | || || | Sbjct 113916 AATTGTGAGCTAA--TACGCAAAGGAATAGAGGAAAAAATGGCAAATGCTGTACTAATTA 113973 Query 2696 AAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAA--GA 2753 || || || || || || || || |||||||| | |||||| |||||||| ||| || Sbjct 113974 AACCAAATCAGATAGGAACATTAACGGAAACTTTGGCCGCTATTGAAATGGCAAAATCGA 114033 Query 2754 AGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGC 2813 | ||| |||| ||| || | || || || ||||||||||| ||||| |||| || | Sbjct 114034 A--TGGCTACAAAGCCGTCATTTCTCATCGATCAGGTGAAACAGAAGACACAACGATATC 114091 Query 2814 TGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGA 2873 | |||| ||| |||| | || || ||||| ||||| || || | || ||| |||| Sbjct 114092 TCATATAGCAATTGCGTCAAATTGCGGACAAATAAAGACTGGCTCGCTATCGCGTTCTGA 114151 Query 2874 CCGTATTGCTAAATACAAC 2892 | |||| || |||||| Sbjct 114152 TAGACTTGCAAAGTACAAC 114170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156035802155688